Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4812 107 2e-18 seq1 105 7e-18 seq3325 102 8e-17 >seq4812 Length=908733 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 139571 GACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCA 139630 ||||| || || |||||||||||| || |||| ||| || ||||| || || || Sbjct 620500 GACTCCTTCTGGATGTTATAATCGGACAAAGTGCGACCGTCCTCAAGCTGCTTTCCGGCG 620559 Query 139631 TAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC 139690 |||| ||||| |||||||| || || || || || ||||| |||||| |||| Sbjct 620560 AAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATTTTGGCCTTTACG 620619 Query 139691 TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTT 139750 | ||| | ||||| | ||||||||||| | ||| | |||||||| || | ||||| Sbjct 620620 TTTTCAATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTG 620679 Query 139751 ACGAATATTTGCAT 139764 ||||| || ||||| Sbjct 620680 ACGAAGATCTGCAT 620693 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| || || | || ||||| || |||||||| |||||| | Sbjct 620059 CCACCACGCAGACGGAGAACCAAATGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGAC 620118 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || || || |||| ||||| |||||||| || || Sbjct 620119 AAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 620178 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || ||| | | ||| | ||||| | ||||||||| Sbjct 620179 ATACCCTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCTGAAGGCTCCACC 620238 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||| || | ||||| ||||| || ||||| Sbjct 620239 TCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTGACGAAGATCTGCAT 620285 >seq1 Length=22559587 Score = 105 bits (116), Expect = 7e-18 Identities = 161/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || ||||| | || ||||| || ||||||||||| || | |||| Sbjct 20155535 CGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCA 20155476 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || ||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct 20155475 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 20155416 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | ||| | || || | || || ||||||| || | Sbjct 20155415 TC-CTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGAT 20155357 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTATGTT 139774 |||||||| || | || || ||||| || ||||| ||| |||| Sbjct 20155356 GGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT--CTTGTGTT 20155313 Score = 104 bits (114), Expect = 2e-17 Identities = 351/542 (65%), Gaps = 11/542 (2%) Strand=Plus/Plus Query 153625 TGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTA 153684 |||||| ||| || || |||||||||||||| ||| | || || || ||| |||| | || Sbjct 20042489 TGTTGAGGGCGATGGATGCCAAGTTGCAAACTGCAATCTCATCCGGAGCGGAATACTCTA 20042548 Query 153685 CTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGC 153744 | ||||| | ||||||||||| || || || |||| ||| || ||||| || | Sbjct 20042549 CGATTTCTGTGCACAAATTGCTACACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCC 20042608 Query 153745 GGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAA 153804 ||| || || ||||| | | |||||| || | || |||||| | || ||| |||| Sbjct 20042609 TGTTGCAGGCATCCTTAAACAACATGTAGGGGTTTCCAGTTTCGACCTGTGCTTCAATAA 20042668 Query 153805 TAGTACGCATCAATG--TGACCGCGGGCA--TTTGATCGCGAAACTGGCCCTTGTCTTCG 153860 | | | | || | ||| | || | || | || || | |||| | || Sbjct 20042669 TGGCAAACCACAGGGATTGAGCCTTAACAGTTCTGTTGGC---AC-GACCCTCTTGCTCA 20042724 Query 153861 TAGTGTTTGTACCAGTATTCAAACTCATCACCAAACGTATTGTTAAGCTCGGGACATTCG 153920 || | | ||| | | ||| || ||||| || || || || |||| | || |||| Sbjct 20042725 TATTTCTCATACAACTTTTCGAATTCATCGCCCCACACATCGTGAAGCCCAGGGCATTTA 20042784 Query 153921 TTGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATAAATATATCGGGA 153980 | || ||||| || ||||| ||||| | | ||||| |||||| | |||||| Sbjct 20042785 TGTGGGCACATTAGCGACCAATCTCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGT 20042844 Query 153981 ACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATGTTTCGACGC 154040 | ||| ||||||| | ||| ||||| || | || || |||| ||||| Sbjct 20042845 ATCCACAGGGCGTAAAACAGATCGCGGGCCCGATTTTCCTCCTTGCCGGTGTTTTTCTTA 20042904 Query 154041 ATGTGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGCGCCT 154100 | | | || || | | || | ||||| || |||| ||||| || || || Sbjct 20042905 AGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCG 20042964 Query 154101 TTACGCTTG---CCGCCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATG 154157 ||||||| || || |||| || | |||| ||| ||||||||| |||| | |||| Sbjct 20042965 GGACGCTTGCCACCTCCTTGATCCACATAACGCGCCACATTGTTGAAGACCCTCAACATG 20043024 Query 154158 GG 154159 || Sbjct 20043025 GG 20043026 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| || || | ||| || ||||| || || Sbjct 1136975 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCGTCCTCCAGCTGCTTGCCG 1137034 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||||||| |||||||| || || || || || ||||| ||| || || Sbjct 1137035 GCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC 1137094 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | ||||||||||| | ||| | ||||||||||| | ||| Sbjct 1137095 ACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTT 1137154 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| |||||||| Sbjct 1137155 TTCACGAAGATTTGCAT 1137171 >seq3325 Length=21082 Score = 102 bits (112), Expect = 8e-17 Identities = 163/235 (69%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || ||||||| || ||||| || || ||||| ||||| | Sbjct 21067 CCACCGCGTAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAC 21008 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || || || | || ||||| |||||||| || || Sbjct 21007 AAAGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGG 20948 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGG-------TGGG 139710 || || || ||||| |||||| |||| | ||| | ||||| | | || Sbjct 20947 ATTCCCTCCTTGTCCTGGATTTTCGCCTTTACGTTTTCAATAGTGTCCGAAGGCTCTTGG 20888 Query 139711 CTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||| || | ||||| |||||||| || |||||||| || |||||| Sbjct 20887 CTCCACCTCAAGAGTGATTGTCTTTCCGGTCAAAGTCTTTACGAAAATCTGCATA 20833 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| || || ||||| || ||| | Sbjct 19613 CCACCGCGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 19554 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| || || ||||| || || |||| ||||| |||||||| || || Sbjct 19553 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGG 19494 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || || || |||||| || | | || | || |||| |||||||||| Sbjct 19493 ATGCCCTCCTTATCCTGGATTTTGGCCTTCACATTCTCAATCGTATCGGAGGGCTCCACC 19434 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || ||||| || || || || || ||||| Sbjct 19433 TCCAAAGTAATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 19387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496010177056000