Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30]
8,680 sequences; 232,923,092 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq4812 107 2e-18
seq1 105 7e-18
seq3325 102 8e-17
>seq4812
Length=908733
Score = 107 bits (118), Expect = 2e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 139571 GACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCA 139630
||||| || || |||||||||||| || |||| ||| || ||||| || || ||
Sbjct 620500 GACTCCTTCTGGATGTTATAATCGGACAAAGTGCGACCGTCCTCAAGCTGCTTTCCGGCG 620559
Query 139631 TAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC 139690
|||| ||||| |||||||| || || || || || ||||| |||||| ||||
Sbjct 620560 AAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATTTTGGCCTTTACG 620619
Query 139691 TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTT 139750
| ||| | ||||| | ||||||||||| | ||| | |||||||| || | |||||
Sbjct 620620 TTTTCAATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTG 620679
Query 139751 ACGAATATTTGCAT 139764
||||| || |||||
Sbjct 620680 ACGAAGATCTGCAT 620693
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | ||| || || | || ||||| || |||||||| |||||| |
Sbjct 620059 CCACCACGCAGACGGAGAACCAAATGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGAC 620118
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| || || ||||| || || || |||| ||||| |||||||| || ||
Sbjct 620119 AAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 620178
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| || || ||||| ||| || ||| | | ||| | ||||| | |||||||||
Sbjct 620179 ATACCCTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCTGAAGGCTCCACC 620238
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | ||| | |||||||| || | ||||| ||||| || |||||
Sbjct 620239 TCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTGACGAAGATCTGCAT 620285
>seq1
Length=22559587
Score = 105 bits (116), Expect = 7e-18
Identities = 161/226 (71%), Gaps = 4/226 (2%)
Strand=Plus/Minus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
|||| || ||||| | || ||||| || ||||||||||| || | ||||
Sbjct 20155535 CGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCA 20155476
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||| ||||| || ||||| |||||||||| |||||||| ||||| || |||||||||
Sbjct 20155475 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 20155416
Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728
|| ||| | || | ||| | | ||| | || || | || || ||||||| || |
Sbjct 20155415 TC-CTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGAT 20155357
Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTATGTT 139774
|||||||| || | || || ||||| || ||||| ||| ||||
Sbjct 20155356 GGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT--CTTGTGTT 20155313
Score = 104 bits (114), Expect = 2e-17
Identities = 351/542 (65%), Gaps = 11/542 (2%)
Strand=Plus/Plus
Query 153625 TGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTA 153684
|||||| ||| || || |||||||||||||| ||| | || || || ||| |||| | ||
Sbjct 20042489 TGTTGAGGGCGATGGATGCCAAGTTGCAAACTGCAATCTCATCCGGAGCGGAATACTCTA 20042548
Query 153685 CTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGC 153744
| ||||| | ||||||||||| || || || |||| ||| || ||||| || |
Sbjct 20042549 CGATTTCTGTGCACAAATTGCTACACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCC 20042608
Query 153745 GGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAA 153804
||| || || ||||| | | |||||| || | || |||||| | || ||| ||||
Sbjct 20042609 TGTTGCAGGCATCCTTAAACAACATGTAGGGGTTTCCAGTTTCGACCTGTGCTTCAATAA 20042668
Query 153805 TAGTACGCATCAATG--TGACCGCGGGCA--TTTGATCGCGAAACTGGCCCTTGTCTTCG 153860
| | | | || | ||| | || | || | || || | |||| | ||
Sbjct 20042669 TGGCAAACCACAGGGATTGAGCCTTAACAGTTCTGTTGGC---AC-GACCCTCTTGCTCA 20042724
Query 153861 TAGTGTTTGTACCAGTATTCAAACTCATCACCAAACGTATTGTTAAGCTCGGGACATTCG 153920
|| | | ||| | | ||| || ||||| || || || || |||| | || ||||
Sbjct 20042725 TATTTCTCATACAACTTTTCGAATTCATCGCCCCACACATCGTGAAGCCCAGGGCATTTA 20042784
Query 153921 TTGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATAAATATATCGGGA 153980
| || ||||| || ||||| ||||| | | ||||| |||||| | ||||||
Sbjct 20042785 TGTGGGCACATTAGCGACCAATCTCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGT 20042844
Query 153981 ACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATGTTTCGACGC 154040
| ||| ||||||| | ||| ||||| || | || || |||| |||||
Sbjct 20042845 ATCCACAGGGCGTAAAACAGATCGCGGGCCCGATTTTCCTCCTTGCCGGTGTTTTTCTTA 20042904
Query 154041 ATGTGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGCGCCT 154100
| | | || || | | || | ||||| || |||| ||||| || || ||
Sbjct 20042905 AGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCG 20042964
Query 154101 TTACGCTTG---CCGCCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATG 154157
||||||| || || |||| || | |||| ||| ||||||||| |||| | ||||
Sbjct 20042965 GGACGCTTGCCACCTCCTTGATCCACATAACGCGCCACATTGTTGAAGACCCTCAACATG 20043024
Query 154158 GG 154159
||
Sbjct 20043025 GG 20043026
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || ||||| || ||| || || | ||| || ||||| || ||
Sbjct 1136975 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCGTCCTCCAGCTGCTTGCCG 1137034
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| |||||||||| |||||||| || || || || || ||||| ||| || ||
Sbjct 1137035 GCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC 1137094
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| | ||||||||||| | ||| | ||||||||||| | |||
Sbjct 1137095 ACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTT 1137154
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| ||||||||
Sbjct 1137155 TTCACGAAGATTTGCAT 1137171
>seq3325
Length=21082
Score = 102 bits (112), Expect = 8e-17
Identities = 163/235 (69%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || |||| ||| | || ||||||| || ||||| || || ||||| ||||| |
Sbjct 21067 CCACCGCGTAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAC 21008
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| || || ||||| || || || | || ||||| |||||||| || ||
Sbjct 21007 AAAGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGG 20948
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGG-------TGGG 139710
|| || || ||||| |||||| |||| | ||| | ||||| | | ||
Sbjct 20947 ATTCCCTCCTTGTCCTGGATTTTCGCCTTTACGTTTTCAATAGTGTCCGAAGGCTCTTGG 20888
Query 139711 CTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||||||||| || | ||||| |||||||| || |||||||| || ||||||
Sbjct 20887 CTCCACCTCAAGAGTGATTGTCTTTCCGGTCAAAGTCTTTACGAAAATCTGCATA 20833
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || ||||| | || ||||| || || ||||| || ||| |
Sbjct 19613 CCACCGCGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 19554
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||| || || ||||| || || |||| ||||| |||||||| || ||
Sbjct 19553 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGG 19494
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
||||| || || || |||||| || | | || | || |||| ||||||||||
Sbjct 19493 ATGCCCTCCTTATCCTGGATTTTGGCCTTCACATTCTCAATCGTATCGGAGGGCTCCACC 19434
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | || | ||||| || ||||| || || || || || |||||
Sbjct 19433 TCCAAAGTAATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 19387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496010177056000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |