Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 399 3e-106 seq4563 154 2e-32 >seq1 Length=22559587 Score = 399 bits (442), Expect = 3e-106 Identities = 1230/1888 (65%), Gaps = 32/1888 (2%) Strand=Plus/Plus Query 78702 CTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGT---TTCGTACGTAGATA 78758 || || |||||| | ||||| ||||| |||| ||| | | || || || || || Sbjct 20041578 CTGATTCTTGTCTACAGTGAACTGAAT---AGCGTTTGCAGCTGGCTTTGTGCGCAGGTA 20041634 Query 78759 GTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGA 78818 |||||||| ||||||||||| |||| || || || || || ||||| Sbjct 20041635 ATACATTCCAGTTTTTAGACCAGCTTTCCAGGAATAAAAGTGTATGGAAGTAAGTTTTCC 20041694 Query 78819 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 78878 || | || ||||| | ||| || || | || ||||| ||||| || || || || | Sbjct 20041695 GTAGTTTGGCTCTGCCACATGAATGTTGAACGACTGACTCTGATCTATAAACGCACCTCG 20041754 Query 78879 GTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TC 78937 ||||| ||||| || || | | |||| || |||||||| | |||||| || | || Sbjct 20041755 ATCTGCGGCCATCTTAATAGTGGACTTTACTGAGATTTCCCACACAGTTTTGTACAGATC 20041814 Query 78938 GCTTAATATCTTCTGGAAGGTTTG--TATTCTGAATGGATCCACCATCTGCCA-TAATCC 78994 || | ||| ||| || | |||| || || || || || ||| | | || Sbjct 20041815 GCGAACCTTCTGGGGGATGGCCTCAATATTTTGGATTGAGCC-CCTGCTGGAAATGATTT 20041873 Query 78995 TATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGAT 79054 ||||| || || || | ||| || | ||| |||| | || | | ||| | | Sbjct 20041874 GGTTCTTCATATCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGT 20041933 Query 79055 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTT 79114 |||| ||||| ||||||||||||| |||| || || |||||||| | || || || | Sbjct 20041934 TAACCACTTGGAATTCTCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTGTAAGGCT 20041993 Query 79115 CCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCA 79174 | | ||||| || || |||| |||||||||||| || || || |||||||| || |||| Sbjct 20041994 CGAATGATTCGTTGTTACCCATAATTTGAGCAGTAGAAGCAGTGGGCATAGGAGCAACCA 20042053 Query 79175 ATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAA 79234 | | || | | ||||| |||| || || || | ||| ||||||| Sbjct 20042054 ACAGGGAGTTCCGGACACCGTGCTTCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAAA 20042113 Query 79235 GATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATC 79294 | | | || | | ||| | || || || ||||| || || || || || Sbjct 20042114 GGTTCGTTGGCTCTTTGTCCCACATGTCGTACTGCAGAATTCCTTTGCTCACGGGGCTTC 20042173 Query 79295 CTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTC 79354 | || |||||||| || ||||| | | ||| | ||||||||| || || || || | Sbjct 20042174 CCTCATAGGTTTCATATGGACCTTCGATCTGGGCCAGTTCACAACTGGCTTCCAAAGCGC 20042233 Query 79355 CGTAATAAATGGTTTCGAAAATCTTCTTATTGA-GATCTTGTGCTTCTAGGCTATCAAAT 79413 |||| || || ||||||||||||| || ||| | || | ||||| || ||| | Sbjct 20042234 CGTAGTAGATAGTTTCGAAAATCTGCTGATTCAAGAGGCCG-GCTTCATCACTTTCATAG 20042292 Query 79414 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 79473 || | | |||||| || ||||| || ||||| || ||||| || || | || | | Sbjct 20042293 GGGAACCGCATGAGAATCAAGGCGTCAGCGAATCCCTGGACACCGATGCCCACGGGACGA 20042352 Query 79474 TGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 79533 || ||| ||| || | | || ||||| | || || | |||||||| || || || Sbjct 20042353 TGCCTCAAATTGGATTTCTTGGCCTCTGGCAGGGGGTAGAAGTTAATATCGATTATCTTG 20042412 Query 79534 TTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCA 79593 || |||||| || | ||| || ||||| ||||| ||||| || ||| Sbjct 20042413 TTAAGATTCTTGGTAACCGTCTTGGTAACTTCCTTAAGTTTCTTGAAATCGTAT-GTCT- 20042470 Query 79594 TCTA-----TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT 79648 ||| | ||||||||||| | |||| ||||||| || ||||| || | ||||| Sbjct 20042471 TCTCGGGAGTGACAAACATGTTGAGGGCGATGGATGCCAAGTTGCAAACTGCAATCTCAT 20042530 Query 79649 TAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAAT 79708 | | | | ||| | || ||||| ||||| | || |||||||| ||||| || | || Sbjct 20042531 CCGGAGCGGAATACTCTACGATTTCTGTGCACAAATTGCTACACTTGATGGTGCCGACAT 20042590 Query 79709 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTT 79768 | || || || ||||| |||| || ||||||||| | | ||| | || | ||||||| Sbjct 20042591 TCTGCTGGTTGCTCTTCCTGTTGCAGGCATCCTTAAACAACATGTAGGGGTTTCCAGTTT 20042650 Query 79769 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATC 79828 | | ||| | ||| ||||| || ||| | | | ||||||| | | ||| | Sbjct 20042651 CGACCTGTGCTTCAATAATGGCAAACCACAGGGATTGAGCCTTAACAGTTCTGTTGG--C 20042708 Query 79829 TCTTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTC 79886 | ||||| || |||| ||| || |||||| || || ||||| ||||||| Sbjct 20042709 ACGACCCTCTTGCTCATATTTCTCATACAACTTTTCGAATTCATCGCCCCACACATCGTG 20042768 Query 79887 TAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTT 79946 | ||||| |||| | || ||||| | |||||| ||||||| ||| || || || Sbjct 20042769 AAGCCCAGGGCATTTATGTGGGCACATTAGCGACCAATCTCCATTGGCCTCGACGCGCTT 20042828 Query 79947 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 80006 |||||||||||| || ||||| || || ||| ||||| | || | || ||||| || Sbjct 20042829 CATAAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGGGCCCGATTTTCCTCCTT 20042888 Query 80007 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 80066 || || || || ||||| || |||||| | | | ||| || ||||| || |||| ||| Sbjct 20042889 GCCGGTGTTTTTCTTAAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTA 20042948 Query 80067 TATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 80126 ||||| | | || || || ||| ||||| ||||| | || | || || || Sbjct 20042949 AATGGCAAAGGCACCGGGACGCTTGCCACCTCCTTGATCCACATAACGCGCCACATTGTT 20043008 Query 80127 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCT 80186 | || |||||||| |||| | ||||||||||| ||||| || ||| | || || | Sbjct 20043009 GAAGACCCTCAACATGGGAACCAAGCCATTGGATGTGCCATTCGTTCCGCAAATCGAGGT 20043068 Query 80187 TCCACTGGCACGAATATTACTAATTGA----TAGACCTATTCCCCCTGCCATTTTAGAGA 80242 || | || || || ||| || || || || || || ||| ||| |||| Sbjct 20043069 GCCCTTTGCCCGGAT----GCAATGGACGTTAAGTCCAATGCCGCCGGCCGATTTCGAGA 20043124 Query 80243 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAA 80302 | || || || ||| | | | | | |||||||| || || | ||||| | | Sbjct 20043125 TCAAGGCACACTGTTCCACGGACTTAAAAATGCCCTCGATAGAGTCGGCCGTCATGGTCA 20043184 Query 80303 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 80362 || || || |||| || | ||| | || | || ||| | || || || | Sbjct 20043185 AGAGGAAGCAAGACGACAGCTGCGGGCGATTTGTGGCAGCGGCAAAAAGTGTTGGCGACG 20043244 Query 80363 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCC 80422 | ||||| || || || |||| ||||| || || || | || | ||||||||| Sbjct 20043245 CATGCGTGAAGTATCGCTCCGACAAGAGATTATAAGTTTCCACGGCCGCATCTATATCCT 20043304 Query 80423 ATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 80482 ||| ||||| | ||| || ||||| ||||| || || || | || | || || Sbjct 20043305 CCCCATGGATTCCGATCGCCACGCGCATCAACATATGTTGCGGACGCTCTGCAATTTTTC 20043364 Query 80483 TATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 80542 ||| | |||| || || || ||| | || ||||| ||||| ||||| || || Sbjct 20043365 CGTTTCTCTTCAGCAGATAGGAACGTTCTAGGGTCTTAAACCCAAAGTAGTTATACCCAA 20043424 Query 80543 AGTCTCGTTCGTAAATAATAACCGAGTT 80570 |||| || ||||| || ||| ||||| Sbjct 20043425 AGTCGCGGTCGTAGATTATAGAAGAGTT 20043452 >seq4563 Length=14502029 Score = 154 bits (170), Expect = 2e-32 Identities = 539/837 (64%), Gaps = 7/837 (1%) Strand=Plus/Minus Query 49660 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 49719 |||||||| ||||| || ||||| || || || || || || ||||| |||| Sbjct 3739895 ACTCCCATGCGCTGGTACTCGCCCACCTTCTTCTCAAAGAAGTTCGTCTTTCCGTCCAGC 3739836 Query 49720 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 49779 || || | |||||||| | ||| || || | ||| || ||||| || | ||| Sbjct 3739835 GAGATCATCTCCATGAAGTTAAAGGGGTTCTTGGTATTGTAGATTTTGCCAACGCTCAAC 3739776 Query 49780 TCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 49839 || | || || ||||| || ||||| || || ||| | || || ||||| Sbjct 3739775 TCCACCAGCAGTCGGTCCGCCACGAATTCAATGTACTGCGACATAAGATCGCAGTTCATG 3739716 Query 49840 CCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCT 49899 || || || || || || | || | || | || || || ||||||| |||||||| Sbjct 3739715 CCGATGAGGTTTACGGGCAAGGCATCGGTTAAGAACTCCTGCTCAATGGCCACCGCATCG 3739656 Query 49900 GTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAA 49959 || || | | | || || ||| | |||| || || | ||||||| Sbjct 3739655 CGGATGATCTCGATGATGCGCTCGCGCCTGGGTCGCTGCACCAAGTGCTGGAACATCAGC 3739596 Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || ||||| |||| |||||||| | || || |||||||| || || ||| Sbjct 3739595 ACGGCAAAGTCGCAATGCAAGCCCTCGTCGCGGGAGATAAGCTCGTTGGAGAAGGTCAGT 3739536 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA--TGACCCAGAAAAGA 50077 || ||||| || || ||||| || ||||| || ||||| ||||| || | | ||| || Sbjct 3739535 CCCGGCATCAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAA--GA 3739478 Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGTCATGT 50136 |||| || || || || || ||||||| | | ||| || || |||| | | | | Sbjct 3739477 AGATGCCCTCGACGGCAGCGAAGGCAATGATGCGCTCCCCGAAATTGGCCGATTTGGAGG 3739418 Query 50137 A--TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194 | |||| | ||||| || ||||| || ||| ||||| || || ||||| | Sbjct 3739417 AGATCCAGGAAAGGGCCCAGTCCGCCTTGCGCTTCACAGCCGGCATTGTCTCGATGGCGT 3739358 Query 50195 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 50254 | || || |||| | || ||| | ||||| ||||||| | ||| |||| Sbjct 3739357 TGAACAGGTAGTCCCGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACA 3739298 Query 50255 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 50314 ||||||| || | ||| || ||||| || || || || ||||| || | |||||| || | Sbjct 3739297 TTTCCGAGTGCACGTTCTCCATGGCGATTTGGAAGCCATAGAAGCACCGAGCCTCCGTGA 3739238 Query 50315 TCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 50374 ||||||| || || || || || | | || || ||||| || || || || | Sbjct 3739237 TCTGCACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTCACGATGCCATCGGATGCGG 3739178 Query 50375 CAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAAT 50434 |||| || |||| || || || || || ||||| | | || | ||| | Sbjct 3739177 CAAAGAAGGCCAGCACGTGCGAGATGAAGTGACGTTCGTCGTCCTTCAGGCGGTGCCAGT 3739118 Query 50435 CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 | | | || || || | ||| || || ||||| ||||| || || ||||| |||| Sbjct 3739117 CGGTCAGGTCCTTGGACAGATCCACCTCCTCCACGGTCCAGAAAGAGGCCTCAGCCT 3739061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718190867835200