Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq3325 96.9 3e-15 seq2 91.5 1e-13 seq4812 82.4 6e-11 >seq3325 Length=21082 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | |||||||| | ||| ||||| || | |||||||||||| Sbjct 20753 CCACCACGCAGACGGAGAACCAAATGCAAAGTCGATTCCTTCTGGATGTTGTAATCGGAC 20694 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| |||| |||||||||||| || ||||||||||| ||||| | || Sbjct 20693 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGG 20634 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | ||| ||||| | ||| || Sbjct 20633 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCTGATGGCTCAACT 20574 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || || || || || || || ||||| || |||||| Sbjct 20573 TCCAAGGTGATGGTCTTGCCAGTAAGTGTCTTGACAAAGATCTGCATT 20526 >seq2 Length=2985096 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | |||||| |||| ||| |||||| || | ||||| |||||| Sbjct 123965 CCTCCACGGAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 123906 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| | || ||||| || || ||||| || |||| ||||| || || | || Sbjct 123905 AAAGTGCGTCCATCCTCCAACTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGA 123846 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | | | || ||| || ||| || Sbjct 123845 ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCGATGGTATCGGAAGGCTCAACC 123786 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || || |||||||| ||||||||||| || Sbjct 123785 TCCAAAGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATTTGCATGTT 123736 >seq4812 Length=908733 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | |||||||| | || |||||| || | |||||||||||| Sbjct 620059 CCACCACGCAGACGGAGAACCAAATGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGAC 620118 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || || | || || ||||| || || | ||||| ||||| | || Sbjct 620119 AAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 620178 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || |||| ||||||| | ||| ||||| || ||| || Sbjct 620179 ATACCCTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCTGAAGGCTCCACC 620238 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || || || || |||||||| || || || |||||| Sbjct 620239 TCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTGACGAAGATCTGCATT 620286 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || ||||| | | ||||| |||| || |||||| || | ||||| |||||| Sbjct 620287 CCACCGCGCAGACGGAGTACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 620346 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| |||| |||||||||||| || || | ||||| ||||| | || Sbjct 620347 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGA 620406 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || |||| | ||||| | ||| ||||| || ||| || Sbjct 620407 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCCGAAGGCTCCACC 620466 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTC 43095 || | || || || || || || ||||||||| Sbjct 620467 TCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTC 620499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381329255863440