Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4563 322 7e-83 seq4673 185 1e-41 seq1 118 2e-21 >seq4563 Length=14502029 Score = 322 bits (356), Expect = 7e-83 Identities = 582/848 (69%), Gaps = 30/848 (4%) Strand=Plus/Plus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 ||||| ||||||| || ||||| || || ||||| |||||||||||||||||| ||| | Sbjct 3739061 AGGCTGAGGCCTCTTTCTGGACCGTGGAGGAGGTGGATCTGTCCAAGGACCTGACCGACT 3739120 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 || | || ||| || || || | || || |||||| | |||||||||||| Sbjct 3739121 GGCAC---CGCCTGAAGGACGACGAACGTCACTTCATCTCGCACGTGCTGGCCTTCTTTG 3739177 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217 ||| |||||||| ||||| ||||| || ||| || || ||| ||| ||| || | Sbjct 3739178 CCGCATCCGATGGCATCGTGAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGA 3739237 Query 125218 TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA 125277 | | |||| |||||| || || ||||||||| || ||||||||||||||||||| Sbjct 3739238 TCACGGAGGCTCGGTGCTTCTATGGCTTCCAAATCGCCATGGAGAACGTGCACTCGGAAA 3739297 Query 125278 TGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTA 125337 ||||| | ||||| |||| ||||| || |||||||| | || || || | Sbjct 3739298 TGTACAGTGTGCTGATCGACACTTACATCCGGGATCCGCATCAGCGGGACTACCTGTTCA 3739357 Query 125338 ACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCGGTGG 125393 |||| ||||| || ||||| || || || ||||| | |||| || ||| Sbjct 3739358 ACGCCATCGAGACAATGCCGGCT----GTGAAGCGCAAGGCGGACTGGGCCCTTTCCTGG 3739413 Query 125394 ATCGATGACGACAAGTCTTC---GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 ||| | ||| || | | || || | | | || ||||| ||||| ||| Sbjct 3739414 ATC---TCCTCCAAATCGGCCAATTTCGGGGAGCGCATCATTGCCTTCGCTGCCGTCGAG 3739470 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 ||||||||||| || || ||||| |||| || ||||| ||||||||||| || ||| Sbjct 3739471 GGCATCTTCTTCAGCGGCAGCTTTGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATG 3739530 Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTT 125570 || |||||||| | |||||| |||| || || ||||||||| | || || |||||| Sbjct 3739531 CCGGGACTGACCTTCTCCAACGAGCTTATCTCCCGCGACGAGGGCTTGCATTGCGACTTT 3739590 Query 125571 GCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA--GATCCAGCGATGAAAAGG 125628 ||| | || |||| | ||| || ||||| || |||| || Sbjct 3739591 GCCGTGCTGATGTTCCAGCACT---TG--------GTGCAGCGACCCAGGCGCGAGCGCA 3739639 Query 125629 TCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTAC 125688 ||||| | || | |||||| ||| || || || ||||| ||||||| || | | Sbjct 3739640 TCATCGAGATCATCCGCGATGCGGTGGCCATTGAGCAGGAGTTCTTAACCGATGCCTTGC 3739699 Query 125689 CGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAG 125748 | || | | | || |||||||||||| | || |||| ||||||| || || ||||| | Sbjct 3739700 CCGTAAACCTCATCGGCATGAACTGCGATCTTATGTCGCAGTACATTGAATTCGTGGCGG 3739759 Query 125749 ATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATT 125808 | || || ||| ||||||| | |||| || ||||| ||||||| |||||| | | Sbjct 3739760 ACCGACTGCTGGTGGAGTTGAGCGTTGGCAAAATCTACAATACCAAGAACCCCTTTAACT 3739819 Query 125809 TCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGT 125868 ||||| | || || || || || ||||| ||||| || ||||||||||| |||||| Sbjct 3739820 TCATGGAGATGATCTCGCTGGACGGAAAGACGAACTTCTTTGAGAAGAAGGTGGGCGAGT 3739879 Query 125869 ACAAACGC 125876 || | ||| Sbjct 3739880 ACCAGCGC 3739887 >seq4673 Length=639550 Score = 185 bits (204), Expect = 1e-41 Identities = 384/570 (67%), Gaps = 14/570 (2%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | ||||| ||||| || |||||||| | || || |||||||| || |||||| Sbjct 277769 TTGCGGAAGAAGATCACTCCAGCGCGAGGACCACGCAGGGTTTTGTGCGTGGTGGTGGTC 277828 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 || ||||| || || || || ||||| | | | | || | | ||| || | Sbjct 277829 ACTATGTCGGCGTATTCGAATGGCGATGGAATCAATCCGGCTGCCACAATGCCTGCCACA 277888 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || || ||||||||||| ||| || | ||||| |||| ||||||| Sbjct 277889 TGGGCCATGTCGGCCATCAGATAGGCACCCACATCATCGCAGATCTGGCGGAATCTGGCG 277948 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 |||||||| | || | |||||| | ||||||| || || | | || ||| Sbjct 277949 TAGTCCAATAGTCGGGAATAGCACGAGATGCCGGCAATAATGATCTGCGGCCGGAAGGTT 278008 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 ||||| ||| || | ||| | ||||| | | || |||| |||| |||||||||| Sbjct 278009 TTGGCCGCCTCCGCCAACTTGTCGTAGTCAATAATACCCGTCTCCGGATTCACCTTGTAC 278068 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAATCCG 127449 |||||||| || || || | || || || || | || ||| ||| || Sbjct 278069 GGCATGCTCTCAAAGAAAATCGACGTGGCCGAGATCTTCTTGGTGGGCGTGAAGAAGCCA 278128 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 || |||| ||| || || ||||||||||| |||||||| || | |||| || | Sbjct 278129 TGGGTCAAGTGACCACCATCGGGCAGATCCAGTCCCATAATCCGGTCGTGGGGACGGCAG 278188 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 | || ||||| || || || |||||| || || || || || || ||| ||| ||| Sbjct 278189 ACACCGGTGTAGACTGCCAAATTGGCCGGGGATCCGGAATAGGGCTGAACATTCACGCCC 278248 Query 127570 CATTCGGACTCGTTCAAATTGAAC-GCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628 || | | ||||| || |||||| |||| | ||| |||| ||| || ||||| || | Sbjct 278249 CACTTGTCCTCGTCCAGGTTGAACAGCTC-GCGACCCCGCTTCTGGGCAAGCAGCTCCAC 278307 Query 127629 GCGATCGATAAACTCGTTACCACCATAGTA 127658 || ||||| |||||||| ||||| ||||| Sbjct 278308 GCAGTCGATGAACTCGTTGCCACCGTAGTA 278337 >seq1 Length=22559587 Score = 118 bits (130), Expect = 2e-21 Identities = 308/470 (66%), Gaps = 0/470 (0%) Strand=Plus/Minus Query 96888 AAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTT 96947 || || || || || | ||| | ||| |||| || |||||| |||| || ||||| || Sbjct 20042972 AAGCGTCCCGGTGCCTTTGCCATTTACCTGGAGCCCTGGCACTCGGATGTCTTTGAGTTC 20042913 Query 96948 ATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCA 97007 | || | |||||| | ||| || || || ||| | || ||||||| || Sbjct 20042912 CTGGAACTTAAGAAAAACACCGGCAAGGAGGAAAATCGGGCCCGCGATCTGTTTTACGCC 20042853 Query 97008 CTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATG 97067 || ||| | || ||| | || |||||||||||| | | | ||| | ||| |||||| Sbjct 20042852 CTGTGGATACCCGATCTCTTTATGAAGCGCGTCGAGGCCAATGGAGATTGGTCGCTAATG 20042793 Query 97068 TGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTAC 97127 ||||| | | || || || |||| |||||||| || || || ||| Sbjct 20042792 TGCCCACATAAATGCCCTGGGCTTCACGATGTGTGGGGCGATGAATTCGAAAAGTTGTAT 20042733 Query 97128 ACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAG 97187 | || ||||||||||| || | ||| || | || | | |||||| Sbjct 20042732 GAGAAATATGAGCAAGAGGGTCGTGCCAACAGAACTGTTAAGGCTCAATCCCTGTGGTTT 20042673 Query 97188 GCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTG 97247 ||||| | || ||||| || ||||||| || ||||| | | |||||| || Sbjct 20042672 GCCATTATTGAAGCACAGGTCGAAACTGGAAACCCCTACATGTTGTTTAAGGATGCCTGC 20042613 Query 97248 AATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAA 97307 || | || |||||||| | | | |||||||||||| | |||| ||||||| ||| Sbjct 20042612 AACAGGAAGAGCAACCAGCAGAATGTCGGCACCATCAAGTGTAGCAATTTGTGCACAGAA 20042553 Query 97308 ATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATC 97357 || |||||||| || ||||||| |||| ||||||||| ||||||| Sbjct 20042552 ATCGTAGAGTATTCCGCTCCGGATGAGATTGCAGTTTGCAACTTGGCATC 20042503 Score = 114 bits (126), Expect = 2e-20 Identities = 371/569 (65%), Gaps = 18/569 (3%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 ||||| ||||| || || ||||| ||||||||| | || | || | |||| | | Sbjct 6127839 GGCGACCTGGGCCCGGTATACGGCTTCCAGTGGCGTCATTTTGGGGCGGAGTACGGCAAA 6127898 Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACTC 70184 ||||| ||| || || || |||| | || || ||| | || | || || || Sbjct 6127899 TGCGACGAC-GATTACAACGGCAAGGGCATCGACCAGCTGC-GCCAGGTGATCGAGACCA 6127956 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCC--TGCAGATTT 70242 |||||| ||||| | || ||| | ||| | |||| |||||||||| || | || Sbjct 6127957 TCAAGAATAATCCTTCGGACAGGCGCATCATCATGTCGGCATGGAATCCACTGGACAT-- 6128014 Query 70243 GCACCAAA--TGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGAT--- 70297 |||||| |||| || || || || ||||| |||| ||||| ||| | || Sbjct 6128015 --ACCAAAGATGGCCCTTCCTCCATGCCACTGCCTGGCACAGTTCTACGTCTCAGAGACG 6128072 Query 70298 ---GGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCC 70354 || | | || ||| |||| |||||||| |||||||||||||| || || ||| Sbjct 6128073 CGCGGTGAGCTTTCCTGCCAGCTGTACCAGAGGAGCGCCGACATGGGCCTGGGCGTGCCC 6128132 Query 70355 TTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAA 70414 || ||||| || ||| | || | || |||||||| || || | || || ||||| Sbjct 6128133 TTCAACATCGCCTCCTACGCCCTGCTCACCCACATGATCGCCCATGTGACGGGTCTGAAG 6128192 Query 70415 GCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCA 70474 | || || || |||||||| |||||| | ||| | || | || || | ||||| Sbjct 6128193 CCCGGAGACTTTGTGCACACCATGGGCGACACGCACATCTACCTGAACCATGTGGAGCCG 6128252 Query 70475 TTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAA 70534 | |||| ||| || || || |||| | || || || ||||||| | | || | Sbjct 6128253 CTGAAGGAGCAGCTGGAGCGCACGCCGCGTCCCTTCCCTAAGCTGGTGATCAAGCGCCAG 6128312 Query 70535 GTTGAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATAC 70594 || | | || || || |||||||| ||| ||| || ||| |||| ||| Sbjct 6128313 GTGCAGGACATCGAGGACTTCCGCTACGAAGACTTTGAGATAGTCGGCTACAATCCTTAC 6128372 Query 70595 CCTAAGATTCCCATGGTTCTGGCTGTTTA 70623 || |||||| |||| ||||||| || Sbjct 6128373 CCCAAGATTAAGATGGAAATGGCTGTGTA 6128401 Score = 86.0 bits (94), Expect = 9e-12 Identities = 323/500 (65%), Gaps = 10/500 (2%) Strand=Plus/Minus Query 97774 ACGGTTTGAGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGT 97833 ||||| | | ||||| || |||| || || |||||||| ||| | ||| | ||| | Sbjct 20042074 ACGGTGTCCGGAACTCCCTGTTGGTTGCTCCTATGCCCACTGCTTCTACTGCTCAAATTA 20042015 Query 97834 TTGGCAATGCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGT 97893 | || || ||||| || || || | ||| | || || || || || | || Sbjct 20042014 TGGGTAACAACGAATCATTCGAGCCTTACACAACGAATATTTATACCAGGCGAGTTCTGT 20041955 Query 97894 CTGGAGAGTTTCAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACGG--CTCAATCT 97951 ||||||| || ||| || ||| || ||| | | ||| | ||||| || | | Sbjct 20041954 CTGGAGAATTCCAAGTGGTTAACCATCATTTGTTAAGGGACCT--AACGGAGCTGGACTT 20041897 Query 97952 GTGGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTA- 98010 |||| |||| || ||| | ||||| | || || || || || ||||| ||| Sbjct 20041896 GTGGGACGACGATATGAAGAACCAAATCATTTCCAGCAGGGGCTCAATCCAAAATATTGA 20041837 Query 98011 --CCATCATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAA 98068 ||||| ||| |||| ||| ||| | ||||| ||||| ||||| || | || Sbjct 20041836 GGCCATCC-CCCAGAAG-GTT-CGCGATCTGTACAAAACTGTGTGGGAAATCTCAGTAAA 20041780 Query 98069 GACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAA 98128 | | || | ||||| || || |||||| | || || |||||||| |||||||| Sbjct 20041779 GTCCACTATTAAGATGGCCGCAGATCGAGGTGCGTTTATAGATCAGAGTCAGTCGTTCAA 20041720 Query 98129 TCTGTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAA 98188 | | || || ||||| | |||| | | ||||| ||||||||||| | ||||| Sbjct 20041719 CATTCATGTGGCAGAGCCAAACTACGGAAAACTTACTTCCATACACTTTTATTCCTGGAA 20041660 Query 98189 CAAGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACC 98248 || || || || || ||||| || ||| | |||||| | || | || || || | Sbjct 20041659 AGCTGGTCTAAAAACTGGAATGTATTACCTGCGCACAAAGCCAGCTGCAAACGCTATTCA 20041600 Query 98249 ATTTACGGTGGACGTGAATC 98268 || || || ||| ||||| Sbjct 20041599 GTTCACTGTAGACAAGAATC 20041580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740978795076800