Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq5016 95.1 1e-14 seq3325 87.8 1e-12 >seq5016 Length=829163 Score = 95.1 bits (104), Expect = 1e-14 Identities = 218/325 (67%), Gaps = 5/325 (2%) Strand=Plus/Minus Query 20955 GCCGCAGCCCAGCCGGCCGCCCGAGTTGCCCGTAACCTTGCTAAGCGGGTGGTCTGTTAA 21014 ||||||||| | ||| | || | ||| ||||| |||||| ||| |||| | Sbjct 682130 GCCGCAGCCAATGCGGGCACCAGCGTTTCCCGTGGACTTGCTCAGCTCGTGGCCACCCTG 682071 Query 21015 GCCGAGGTCATCGCGATCCGTGTGCACTACCAAGCTACGACCCAATATGCTGAGCGGACC 21074 |||||| |||||| ||| | ||| || || | | | || || | |||||| | || Sbjct 682070 GCCGAGATCATCGGCATCGGCGTGGACCACAACGGTGCGCCCTATGATGCTGTCGGCGCC 682011 Query 21075 AAACAAGCTCATCACGTTGTCGCTCATGTCGACAGGCGTCAGCGCGGTGCAGCCCGCGGA 21134 ||||| | ||| |||| | |||| ||| ||| | | || || ||| Sbjct 682010 GAACAACGTGATCTTCGAGTCGGTAATGTTGACCTTCGTGGGACAGTCGCCGCTCGCCTC 681951 Query 21135 GCGGACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTG 21194 | |||||||||||| || | ||| || | || || ||||||| ||||| | | Sbjct 681950 A---ATGTTGCCCAGATCTCCCAGGTGACGATTCTCGTCGGCGGGAGCTCCGTGCTCCTT 681894 Query 21195 GTGCGTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACT 21253 | | ||||| || |||||| |||| ||| ||||||||||| || |||| || |||| Sbjct 681893 GC-CATAGGGGTTGAAGTGCGGTCCGGACGACATGCAGCCGTTGGTGTTGTCCCCAAACT 681835 Query 21254 CGTGAACGTGAAAGCCGTGCAGTCC 21278 |||||||||| || ||||| || || Sbjct 681834 CGTGAACGTGGAATCCGTGAAGGCC 681810 >seq3325 Length=21082 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || |||||||| | || || | ||||| Sbjct 19824 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTGCGACCATCCTC 19765 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || |||| || | ||||||||| ||| | ||||| ||||| Sbjct 19764 CAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 19705 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | ||| ||||| |||||| ||| | || |||||||| Sbjct 19704 GATCTTGGCCTTCACATTCTCGATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTTTT 19645 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || ||||| |||||||| || |||||| Sbjct 19644 GCCGGTCAAAGTCTTGACAAAGATCTGCATT 19614 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || |||||||| | || || | ||||| Sbjct 20052 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTGCGACCATCCTC 19993 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || |||| || | ||||||||| ||| | ||||| ||||| Sbjct 19992 CAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 19933 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | ||| ||||| |||||| ||| | || |||||||| Sbjct 19932 GATCTTGGCCTTCACATTCTCGATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTTTT 19873 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || ||||| |||||||| || |||||| Sbjct 19872 GCCGGTCAAAGTCTTGACAAAGATCTGCATT 19842 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| || |||||||| ||||| |||||||| | || || | ||||| Sbjct 20279 ACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGACAGGGTGCGACCATCCTCA 20220 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || || | || || | ||||||||| ||| | |||||| ||||| Sbjct 20219 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCTTGG 20160 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | | || || ||| ||| || | ||| ||||| || Sbjct 20159 ATCTTAGCCTTGACGTTTTCAATGGTGTCCGAAGGTTCCACCTCCAGGGTGATGGTCTTG 20100 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | |||||||||||| || |||||| Sbjct 20099 CCAGTAAGAGTTTTGACAAAGATCTGCATT 20070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414528943379920