Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2 102 5e-17 seq4812 93.3 3e-14 seq3325 82.4 5e-11 >seq2 Length=2985096 Score = 102 bits (112), Expect = 5e-17 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||||||||||| || ||||| || || |||||||| || |||||| || || | Sbjct 124181 CGCAGGACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGACAAAGTGCGTCCG 124122 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| |||||||| || || ||||| |||||||| | ||| ||||| || || Sbjct 124121 TCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGAATGCCCTCCTTG 124062 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | || || ||| || | ||| |||| ||| Sbjct 124061 TCCTGGATCTTGGCC---TTCACGTTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTG 124005 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || || || ||||| || ||||| Sbjct 124004 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 123967 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| || | || ||||| || || || ||||| || |||||| || || || || Sbjct 123948 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGTCCATCCTC 123889 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||| |||||||| || || | ||| |||||||| | ||| ||||| || || || Sbjct 123888 CAACTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 123829 Query 33280 AATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 ||| |||| | || | | || || ||| || | ||| |||| ||| || || Sbjct 123828 GATCTTGGCCT---TAACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGT 123772 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || || ||||| ||||||||||||||||| Sbjct 123771 CTTGCCAGTCAGGGTTTTCACGAAAATTTGCATGTT 123736 >seq4812 Length=908733 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||| |||||||| || || || |||||||| |||||| || | || || Sbjct 620077 ACCAAATGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGACAAAGTGCGACCATCCTCA 620136 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | |||||||| || || | ||| ||||| || | ||| || || || || || Sbjct 620137 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGG 620196 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || ||| ||| ||||| || | || ||||| || || || || Sbjct 620197 ATCTTGGCTTTGACGTTTTCAATGGTGTCTGAAGGCTCCACCTCCAGGGTGATGGTCTTG 620256 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||||||||| ||||| || ||||| Sbjct 620257 CCAGTAAGAGTTTTGACGAAGATCTGCAT 620285 >seq3325 Length=21082 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| ||||| |||||||| || || || |||||||| |||| || | || || Sbjct 20279 ACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGACAGGGTGCGACCATCCTCA 20220 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | |||||||| || || | ||| ||||| || | ||| ||||| || || || Sbjct 20219 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCTTGG 20160 Query 33281 ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 ||| |||| | || ||| ||| ||||| |||| || ||||| || || || Sbjct 20159 ATCTTAGCCT---TGACGTTTTCAATGGTGTCCGAAGGTTCCACCTCCAGGGTGATGGTC 20103 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||||||||| || || || ||||| Sbjct 20102 TTGCCAGTAAGAGTTTTGACAAAGATCTGCAT 20071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318743877314640