Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30]
8,680 sequences; 232,923,092 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1 167 5e-36
seq3325 123 6e-23
seq4563 91.5 3e-13
>seq1
Length=22559587
Score = 167 bits (184), Expect = 5e-36
Identities = 163/210 (78%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416
|| || || || || |||||||| ||||||||||| || || | || ||||| || ||
Sbjct 20155523 TGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGC 20155464
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||| || || || | ||| ||||| ||||| ||||||||||| |||||||||||
Sbjct 20155463 TTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTG 20155404
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
||||| |||||||| | ||||| |||||| ||||| || || || ||||| || ||
Sbjct 20155403 GCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTG 20155344
Query 104537 AGTGTTTTTACAAATATCTGCATTTTGTGT 104566
|| || || || || |||||||| ||||||
Sbjct 20155343 AGGGTCTTCACGAAGATCTGCATCTTGTGT 20155314
>seq3325
Length=21082
Score = 123 bits (136), Expect = 6e-23
Identities = 148/201 (74%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || || | ||||| || |||||||| ||
Sbjct 19583 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGTTGTTTGCCG 19524
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| ||||| || || || || || |||||||| || || || ||
Sbjct 19523 GCGAAGATAAGACGCTGCTGATCTGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTC 19464
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | |||||| || || ||||| | ||||| ||||| ||||| | ||
Sbjct 19463 ACATTCTCAATCGTATCGGAGGGCTCCACCTCCAAAGTAATGGTCTTTCCAGTCAAGGTC 19404
Query 104543 TTTACAAATATCTGCATTTTG 104563
|| ||||| ||||||||||||
Sbjct 19403 TTCACAAAGATCTGCATTTTG 19383
Score = 123 bits (136), Expect = 6e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || | ||| || || ||||| ||||| || || || || || || || | |||||
Sbjct 20738 AGAACCAAATGCAAAGTCGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCC 20679
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| |||||||| || || || || | | ||| ||||| || || || || || || |||
Sbjct 20678 TCCAGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGGATGCCCTCCTTGTCC 20619
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|| ||||| || || |||||||| | ||| || || || || || | || || |||
Sbjct 20618 TGGATCTTGGCCTTCACATTTTCAATGGTGTCTGATGGCTCAACTTCCAAGGTGATGGTC 20559
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|| ||||||||||| || ||||| |||||||||
Sbjct 20558 TTGCCAGTAAGTGTCTTGACAAAGATCTGCATT 20526
>seq4563
Length=14502029
Score = 91.5 bits (100), Expect = 3e-13
Identities = 179/262 (68%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 238626 GGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGA 238685
|||||||||||| | || | || ||||| ||||| || ||||| || || |||||
Sbjct 8076989 GGCAAAATGCATGGCTTTCTGCGCATGTACTGGGCCAAGAAGATTCTCGAGTGGACCGCC 8076930
Query 238686 TCTCCAAAGGAAGCTCTTAGATATAGTATTTATCTGAACGATAAATACGAACTCGACGGT 238745
| || |||| || || |||| ||| ||||| || || ||| ||||| ||
Sbjct 8076929 ACCCCTGAGGAGGCACTGGAATATGCGATTCTCCTGAATGACAAGTACAGCCTCGATGG- 8076871
Query 238746 ACG-GATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGC 238804
||| ||||| || ||||| || || || |||||||| || | ||| | ||||| | ||
Sbjct 8076870 ACGCGATCCCAATGGATATGTCGGCTGCATGTGGTCCATTGGGGGAATCCACGACATGGG 8076811
Query 238805 ATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAA 238864
||| ||| | | || || || || ||| |||||||||| ||| | || |||
Sbjct 8076810 CTGGAAGGAGCGGGCCATTTTCGGCAAGGTTCGATACATGAACTATCAGGGGTGCAAGCG 8076751
Query 238865 AAAATTTGATGTAAATGCTTTT 238886
|| || ||||| || || |||
Sbjct 8076750 CAAGTTCGATGTTAACGCATTT 8076729
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151270350105440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |