Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 167 5e-36 seq3325 123 6e-23 seq4563 91.5 3e-13 >seq1 Length=22559587 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || || || |||||||| ||||||||||| || || | || ||||| || || Sbjct 20155523 TGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGC 20155464 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || | ||| ||||| ||||| ||||||||||| ||||||||||| Sbjct 20155463 TTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTG 20155404 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | ||||| |||||| ||||| || || || ||||| || || Sbjct 20155403 GCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTG 20155344 Query 104537 AGTGTTTTTACAAATATCTGCATTTTGTGT 104566 || || || || || |||||||| |||||| Sbjct 20155343 AGGGTCTTCACGAAGATCTGCATCTTGTGT 20155314 >seq3325 Length=21082 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | ||||| || |||||||| || Sbjct 19583 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGTTGTTTGCCG 19524 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || || || || |||||||| || || || || Sbjct 19523 GCGAAGATAAGACGCTGCTGATCTGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTC 19464 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| || || ||||| | ||||| ||||| ||||| | || Sbjct 19463 ACATTCTCAATCGTATCGGAGGGCTCCACCTCCAAAGTAATGGTCTTTCCAGTCAAGGTC 19404 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| |||||||||||| Sbjct 19403 TTCACAAAGATCTGCATTTTG 19383 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| || || ||||| ||||| || || || || || || || | ||||| Sbjct 20738 AGAACCAAATGCAAAGTCGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCC 20679 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||| || || || || | | ||| ||||| || || || || || || ||| Sbjct 20678 TCCAGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGGATGCCCTCCTTGTCC 20619 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || |||||||| | ||| || || || || || | || || ||| Sbjct 20618 TGGATCTTGGCCTTCACATTTTCAATGGTGTCTGATGGCTCAACTTCCAAGGTGATGGTC 20559 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||||||||| || ||||| ||||||||| Sbjct 20558 TTGCCAGTAAGTGTCTTGACAAAGATCTGCATT 20526 >seq4563 Length=14502029 Score = 91.5 bits (100), Expect = 3e-13 Identities = 179/262 (68%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 238626 GGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGA 238685 |||||||||||| | || | || ||||| ||||| || ||||| || || ||||| Sbjct 8076989 GGCAAAATGCATGGCTTTCTGCGCATGTACTGGGCCAAGAAGATTCTCGAGTGGACCGCC 8076930 Query 238686 TCTCCAAAGGAAGCTCTTAGATATAGTATTTATCTGAACGATAAATACGAACTCGACGGT 238745 | || |||| || || |||| ||| ||||| || || ||| ||||| || Sbjct 8076929 ACCCCTGAGGAGGCACTGGAATATGCGATTCTCCTGAATGACAAGTACAGCCTCGATGG- 8076871 Query 238746 ACG-GATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGC 238804 ||| ||||| || ||||| || || || |||||||| || | ||| | ||||| | || Sbjct 8076870 ACGCGATCCCAATGGATATGTCGGCTGCATGTGGTCCATTGGGGGAATCCACGACATGGG 8076811 Query 238805 ATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAA 238864 ||| ||| | | || || || || ||| |||||||||| ||| | || ||| Sbjct 8076810 CTGGAAGGAGCGGGCCATTTTCGGCAAGGTTCGATACATGAACTATCAGGGGTGCAAGCG 8076751 Query 238865 AAAATTTGATGTAAATGCTTTT 238886 || || ||||| || || ||| Sbjct 8076750 CAAGTTCGATGTTAACGCATTT 8076729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151270350105440