Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 4e-14 >seq1 Length=22559587 Score = 93.3 bits (102), Expect = 4e-14 Identities = 174/254 (69%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTGA 5299 || || ||||| ||||| |||||||| |||||||| |||| || ||| || Sbjct 20854256 CCCGTGGAACCAAATCCTCCCTCGCCGCGCTCGGTGTCCTCCAGCTTGTCCACCAACTGC 20854197 Query 5300 ACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACC 5359 | | | || | | ||||||||||| || | ||| || || | ||| || ||| ||| Sbjct 20854196 AGTTCCGGATAGAAGATGCGTTCGCAAATGAACTGGGCAATGCGGTCGCCACGCTTCACC 20854137 Query 5360 TCAAAGTCGCTGTTTCCGA--AGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTT 5417 || || || | ||||| || || || || || || | ||||| |||||||| | Sbjct 20854136 TCGAACTCCACG--TCCGAGTGATTGAAGAGGACGACGCCAAGGTTGCCGCGGTAGTCCT 20854079 Query 5418 CGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTG 5477 |||| | ||||| || ||||| ||||| |||| || || || || || || || || | Sbjct 20854078 CGTCCACCACGCCGGCACCCACATCGATGAAGTTCTTTACGGCCAGTCCAGATCGCGGGG 20854019 Query 5478 CTATGCGTCCGTAG 5491 | | ||||||||| Sbjct 20854018 CCACCCGTCCGTAG 20854005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447701819081600