Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq1 150 2e-31 >seq1 Length=22559587 Score = 150 bits (166), Expect = 2e-31 Identities = 210/290 (72%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||||||||| || ||||| || |||| | || || || ||||| ||||| Sbjct 20854259 ACGCCCGTGGAACCAAATCCTCCCTCGCCGCGCTCGGTGTCCTCCAGCTTGTCCACCAAC 20854200 Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || || | | || ||| ||||| || | ||| || || |||||||| ||| Sbjct 20854199 TGCAGTTCCGGATA-GAAGATGCGTTCGCAAATGAACTGGGCAATGCGGTCGCCACGCTT 20854141 Query 5620 TACCTCGAAATCGTTGTGGCCGAAG--TTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 |||||||| || || |||| ||||| || || ||||| | ||||||||||||| Sbjct 20854140 CACCTCGAACTCCACGT--CCGAGTGATTGAAGAGGACGACGCCAAGGTTGCCGCGGTAG 20854083 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 || |||| | |||||| || ||||| |||||||||| ||| || ||||| || || || Sbjct 20854082 TCCTCGTCCACCACGCCGGCACCCACATCGATGAAGTTCTTTACGGCCAGTCCAGATCGC 20854023 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 || ||||| || |||||| | || ||||||| ||| | |||||| || || Sbjct 20854022 GGGGCCACCCGTCCGTAGGAGCCCTCGGGAACCTGCACCTGCAGATCGGT 20853973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430008905620160