Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq3325 113 4e-20 seq1 104 2e-17 seq4812 86.0 5e-12 >seq3325 Length=21082 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || ||||| ||| |||||| || ||||||||||||| ||| || | ||||| Sbjct 19824 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTGCGACCATCCTC 19765 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || |||| | |||||||||||| || | | ||||||||| Sbjct 19764 CAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 19705 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | | |||||||| | || ||| || | || |||||||| Sbjct 19704 GATCTTGGCCTTCACATTCTCGATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTTTT 19645 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| | ||| || ||||| |||||||| Sbjct 19644 GCCGGTCAAAGTCTTGACAAAGATCTGCAT 19615 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || ||||| ||| |||||| || ||||||||||||| ||| || | ||||| Sbjct 20052 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTGCGACCATCCTC 19993 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || |||| | |||||||||||| || | | ||||||||| Sbjct 19992 CAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 19933 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | | |||||||| | || ||| || | || |||||||| Sbjct 19932 GATCTTGGCCTTCACATTCTCGATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTTTT 19873 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| | ||| || ||||| |||||||| Sbjct 19872 GCCGGTCAAAGTCTTGACAAAGATCTGCAT 19843 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/217 (69%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || ||||| ||| |||||| || ||||||||||||| ||| || | ||||| Sbjct 21050 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTGCGACCATCCTC 20991 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || |||| | |||||||||||| || | | ||||||||| Sbjct 20990 CAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 20931 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGG-------TAGACTCCGTCTCGACTGTTA 48689 |||||| ||| | | || || || | | | |||| ||| | || | Sbjct 20930 GATTTTCGCCTTTACGTTTTCAATAGTGTCCGAAGGCTCTTGGCTCCACCTCAAGAGTGA 20871 Query 48690 TGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || ||||| | ||| || || ||||||||||| Sbjct 20870 TTGTCTTTCCGGTCAAAGTCTTTACGAAAATCTGCAT 20834 >seq1 Length=22559587 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | ||| | || || || |||||| || |||||||| || | Sbjct 1136944 ACCACCGCGCAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 1137003 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || ||| |||||||||||||||| ||| || | || | |||||||||||| || Sbjct 1137004 CAGGGTTCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 1137063 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| || || ||| | | | | ||||| || | || |||| Sbjct 1137064 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCAC 1137123 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || ||||| || |||||||| |||||||| || || ||||| ||| Sbjct 1137124 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATGGTG 1137175 >seq4812 Length=908733 Score = 86.0 bits (94), Expect = 5e-12 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| |||||||||||||| | ||| || | ||||| |||||||| ||| || | Sbjct 620094 CTCCTTCTGAATGTTGTAATCGGACAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAA 620153 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||||||| || | || |||||||| || || ||| | || Sbjct 620154 GATGAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTT-GGCT---TTGA 620209 Query 48655 CG----CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTT 48710 || | ||||| || | || |||| ||| | || ||||| || || || ||||||| Sbjct 620210 CGTTTTCAATGGTGTCTGAAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGAGTTT 620269 Query 48711 TCACAAAAATCTGCAT 48726 | || || |||||||| Sbjct 620270 TGACGAAGATCTGCAT 620285 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||| ||||| | ||| || ||||||| |||||||| ||| || | Sbjct 620502 CTCCTTCTGGATGTTATAATCGGACAAAGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAA 620561 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||||||| || | || |||||||| ||||| ||| | Sbjct 620562 GATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATTTTGGCCTTTACGTT 620621 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | || |||| ||| | || ||||| || || || |||||||| || Sbjct 620622 TTCAATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTGAC 620681 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 620682 GAAGATCTGCAT 620693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421206636888680