Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30]
8,680 sequences; 232,923,092 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq3325 113 4e-20
seq1 104 2e-17
seq4812 86.0 5e-12
>seq3325
Length=21082
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| || ||||| ||| |||||| || ||||||||||||| ||| || | |||||
Sbjct 19824 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTGCGACCATCCTC 19765
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
||||||||| ||| || |||| | |||||||||||| || | | |||||||||
Sbjct 19764 CAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 19705
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || ||| | | | | |||||||| | || ||| || | || ||||||||
Sbjct 19704 GATCTTGGCCTTCACATTCTCGATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTTTT 19645
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||||| | ||| || ||||| ||||||||
Sbjct 19644 GCCGGTCAAAGTCTTGACAAAGATCTGCAT 19615
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| || ||||| ||| |||||| || ||||||||||||| ||| || | |||||
Sbjct 20052 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTGCGACCATCCTC 19993
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
||||||||| ||| || |||| | |||||||||||| || | | |||||||||
Sbjct 19992 CAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 19933
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || ||| | | | | |||||||| | || ||| || | || ||||||||
Sbjct 19932 GATCTTGGCCTTCACATTCTCGATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTTTT 19873
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||||| | ||| || ||||| ||||||||
Sbjct 19872 GCCGGTCAAAGTCTTGACAAAGATCTGCAT 19843
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/217 (69%), Gaps = 7/217 (3%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| || ||||| ||| |||||| || ||||||||||||| ||| || | |||||
Sbjct 21050 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTGCGACCATCCTC 20991
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
||||||||| ||| || |||| | |||||||||||| || | | |||||||||
Sbjct 20990 CAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 20931
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGG-------TAGACTCCGTCTCGACTGTTA 48689
|||||| ||| | | || || || | | | |||| ||| | || |
Sbjct 20930 GATTTTCGCCTTTACGTTTTCAATAGTGTCCGAAGGCTCTTGGCTCCACCTCAAGAGTGA 20871
Query 48690 TGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| || || ||||| | ||| || || |||||||||||
Sbjct 20870 TTGTCTTTCCGGTCAAAGTCTTTACGAAAATCTGCAT 20834
>seq1
Length=22559587
Score = 104 bits (114), Expect = 2e-17
Identities = 162/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| ||||||| | | ||| | || || || |||||| || |||||||| || |
Sbjct 1136944 ACCACCGCGCAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 1137003
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| ||| |||||||||||||||| ||| || | || | |||||||||||| ||
Sbjct 1137004 CAGGGTTCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 1137063
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | ||||||||| || || ||| | | | | ||||| || | || ||||
Sbjct 1137064 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCAC 1137123
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
||| | || ||||| || |||||||| |||||||| || || ||||| |||
Sbjct 1137124 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATGGTG 1137175
>seq4812
Length=908733
Score = 86.0 bits (94), Expect = 5e-12
Identities = 138/196 (70%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| |||||||||||||| | ||| || | ||||| |||||||| ||| || |
Sbjct 620094 CTCCTTCTGAATGTTGTAATCGGACAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAA 620153
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
|| | |||||||||||| || | || |||||||| || || ||| | ||
Sbjct 620154 GATGAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTT-GGCT---TTGA 620209
Query 48655 CG----CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTT 48710
|| | ||||| || | || |||| ||| | || ||||| || || || |||||||
Sbjct 620210 CGTTTTCAATGGTGTCTGAAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGAGTTT 620269
Query 48711 TCACAAAAATCTGCAT 48726
| || || ||||||||
Sbjct 620270 TGACGAAGATCTGCAT 620285
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || ||||| ||||| | ||| || ||||||| |||||||| ||| || |
Sbjct 620502 CTCCTTCTGGATGTTATAATCGGACAAAGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAA 620561
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
|| | |||||||||||| || | || |||||||| ||||| ||| |
Sbjct 620562 GATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATTTTGGCCTTTACGTT 620621
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
| ||||| || | || |||| ||| | || ||||| || || || |||||||| ||
Sbjct 620622 TTCAATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTGAC 620681
Query 48715 AAAAATCTGCAT 48726
|| ||||||||
Sbjct 620682 GAAGATCTGCAT 620693
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421206636888680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |