Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30]
8,680 sequences; 232,923,092 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq4563 122 5e-23
seq7574 118 6e-22
>seq4563
Length=14502029
Score = 122 bits (134), Expect = 5e-23
Identities = 86/97 (89%), Gaps = 4/97 (4%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 13028 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 13087
Query 11516 TGAGCTAATGGGCCGTC--GACG--ATTGTGATTTTT 11548
|||||||||||||| || |||| ||| ||||||||
Sbjct 13088 TGAGCTAATGGGCCTTCTTGACGCCATTTTGATTTTT 13124
Score = 120 bits (132), Expect = 2e-22
Identities = 85/97 (88%), Gaps = 1/97 (1%)
Strand=Plus/Plus
Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
|||||| |||| || | | ||||||||| |||||||||| |||||||||||||||||
Sbjct 13526 AATTAAAAAAAGATGATGT-GGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 13584
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533
|||||||||||| |||||||||||||||||||| |||
Sbjct 13585 GCACGACGCTCTAACCAACTGAGCTAATGGGCCTTCG 13621
Score = 116 bits (128), Expect = 2e-21
Identities = 86/99 (87%), Gaps = 4/99 (4%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 12796 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 12855
Query 11516 TGAGCTAATGGGCC--GTCGACG--ATTGTGATTTTTCA 11550
|||||||||||||| || |||| || ||||||| ||
Sbjct 12856 TGAGCTAATGGGCCTTGTTGACGCCATCTTGATTTTCCA 12894
Score = 113 bits (124), Expect = 2e-20
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 13262 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 13321
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 13322 TGAGCTAATGGGCC 13335
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 12509 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 12568
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 12569 TGAGCTAATGGGCC 12582
>seq7574
Length=3157482
Score = 118 bits (130), Expect = 6e-22
Identities = 78/87 (90%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 974634 AAAAAATAGAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 974693
Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530
||||| |||| ||||||||||||||||
Sbjct 974694 GCTCTAACCAGCTGAGCTAATGGGCCG 974720
Score = 114 bits (126), Expect = 7e-21
Identities = 83/96 (86%), Gaps = 3/96 (3%)
Strand=Plus/Plus
Query 11437 AATTAATAAAAAATCAAATT---GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493
|| ||| |||||| ||||| ||||||||| |||||||||| ||||||||||||||
Sbjct 134696 AAATAACCAAAAATTAAATTACTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTA 134755
Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||| |||| |||||||||||||||
Sbjct 134756 TTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 134791
Score = 113 bits (124), Expect = 2e-20
Identities = 82/95 (86%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 11437 AATTAATAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494
|| || ||||||| || ||||||||||| |||||||||| |||||||||||||||
Sbjct 981377 AAATATTAAAAAAGTAATCTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTAT 981436
Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||| |||| |||||||||||||||
Sbjct 981437 TAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 981471
Score = 113 bits (124), Expect = 2e-20
Identities = 78/89 (88%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||||| ||| |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 982528 AAAAAAAAGTCATTATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 982469
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| |||| |||||||||||||||
Sbjct 982468 GACGCTCTAACCAGCTGAGCTAATGGGCC 982440
Lambda K H
0.638 0.409 0.919
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261463537499680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |