Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4563 122 5e-23 seq7574 118 6e-22 >seq4563 Length=14502029 Score = 122 bits (134), Expect = 5e-23 Identities = 86/97 (89%), Gaps = 4/97 (4%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 13028 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 13087 Query 11516 TGAGCTAATGGGCCGTC--GACG--ATTGTGATTTTT 11548 |||||||||||||| || |||| ||| |||||||| Sbjct 13088 TGAGCTAATGGGCCTTCTTGACGCCATTTTGATTTTT 13124 Score = 120 bits (132), Expect = 2e-22 Identities = 85/97 (88%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| |||| || | | ||||||||| |||||||||| ||||||||||||||||| Sbjct 13526 AATTAAAAAAAGATGATGT-GGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 13584 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 |||||||||||| |||||||||||||||||||| ||| Sbjct 13585 GCACGACGCTCTAACCAACTGAGCTAATGGGCCTTCG 13621 Score = 116 bits (128), Expect = 2e-21 Identities = 86/99 (87%), Gaps = 4/99 (4%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 12796 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 12855 Query 11516 TGAGCTAATGGGCC--GTCGACG--ATTGTGATTTTTCA 11550 |||||||||||||| || |||| || ||||||| || Sbjct 12856 TGAGCTAATGGGCCTTGTTGACGCCATCTTGATTTTCCA 12894 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 13262 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 13321 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 13322 TGAGCTAATGGGCC 13335 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 12509 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 12568 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 12569 TGAGCTAATGGGCC 12582 >seq7574 Length=3157482 Score = 118 bits (130), Expect = 6e-22 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 974634 AAAAAATAGAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 974693 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| |||| |||||||||||||||| Sbjct 974694 GCTCTAACCAGCTGAGCTAATGGGCCG 974720 Score = 114 bits (126), Expect = 7e-21 Identities = 83/96 (86%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATT---GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 || ||| |||||| ||||| ||||||||| |||||||||| |||||||||||||| Sbjct 134696 AAATAACCAAAAATTAAATTACTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTA 134755 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||| ||||||||||||||| Sbjct 134756 TTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 134791 Score = 113 bits (124), Expect = 2e-20 Identities = 82/95 (86%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 || || ||||||| || ||||||||||| |||||||||| ||||||||||||||| Sbjct 981377 AAATATTAAAAAAGTAATCTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTAT 981436 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| ||||||||||||||| Sbjct 981437 TAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 981471 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 982528 AAAAAAAAGTCATTATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 982469 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| ||||||||||||||| Sbjct 982468 GACGCTCTAACCAGCTGAGCTAATGGGCC 982440 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261463537499680