Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1 136 4e-27 seq4812 129 5e-25 seq3325 129 5e-25 seq2 113 4e-20 >seq1 Length=22559587 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||||||| || ||||| || | |||||| || | ||| | | Sbjct 20155535 CGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCA 20155476 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || | ||||| | | ||||||||||||||||| ||||||||| Sbjct 20155475 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 20155416 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || || ||||| ||| ||| || | | ||||| |||| |||||| Sbjct 20155415 TCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGATG 20155356 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||| ||||||||||| Sbjct 20155355 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 20155321 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | || || ||||| || | ||| || ||| || || | ||||| Sbjct 1136962 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCGTCCTC 1137021 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| | | ||||||||||| || || || || ||||| | Sbjct 1137022 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 1137081 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||| || ||| ||||| | | || || || | |||||||| || Sbjct 1137082 GATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTT 1137141 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || |||||||| ||||| |||||| Sbjct 1137142 GCCGGTGAGGGTTTTCACGAAGATTTGCATG 1137172 >seq4812 Length=908733 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| ||||| || || ||||| || | ||| |||||| || |||| |||||| Sbjct 620077 ACCAAATGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGACAAAGTGCGACCATCCTCA 620136 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| |||||| | ||||| | | ||||||||||| |||||||| || ||||| | Sbjct 620137 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGG 620196 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || |||||| | | ||||| | | || || || | |||||||| || Sbjct 620197 ATCTTGGCTTTGACGTTTTCAATGGTGTCTGAAGGCTCCACCTCCAGGGTGATGGTCTTG 620256 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||||| || ||||||||||| Sbjct 620257 CCAGTAAGAGTTTTGACGAAGATCTGCAT 620285 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 94814 GATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCA 94873 || ||||| || | |||||||||| || |||| ||||| ||||| |||||| | Sbjct 620500 GACTCCTTCTGGATGTTATAATCGGACAAAGTGCGACCGTCCTCAAGCTGCTTTCCGGCG 620559 Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| | | ||||||||||| |||||||| || ||||| | ||||| ||||| ||| Sbjct 620560 AAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATTTTGGCCTTTACG 620619 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | | ||||| | | || || || | |||||||| || |||||||||||||| Sbjct 620620 TTTTCAATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTG 620679 Query 94994 ACAAAGATCTGCAT 95007 || ||||||||||| Sbjct 620680 ACGAAGATCTGCAT 620693 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || ||||| || | ||| || ||| || ||| |||||| Sbjct 620305 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 620364 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| ||| | ||||| | | ||||||||||| |||||||| || ||||| | Sbjct 620365 AGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGG 620424 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| | | ||||| | | || || || | |||||||| || Sbjct 620425 ATCTTGGCCTTGACGTTTTCAATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTG 620484 Query 94979 CCAGTAAGAGTTTTC 94993 ||||||||||||||| Sbjct 620485 CCAGTAAGAGTTTTC 620499 >seq3325 Length=21082 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||||||||| || || ||||| || | ||| |||||| || ||| |||||| Sbjct 20279 ACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGACAGGGTGCGACCATCCTCA 20220 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| |||||| | ||||| | | ||||||||||| || || || || ||||| | Sbjct 20219 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCTTGG 20160 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| | | ||||| | | || || || | |||||||| || Sbjct 20159 ATCTTAGCCTTGACGTTTTCAATGGTGTCCGAAGGTTCCACCTCCAGGGTGATGGTCTTG 20100 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||||| |||||||||||||| Sbjct 20099 CCAGTAAGAGTTTTGACAAAGATCTGCAT 20071 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| |||||||| |||||||| || | ||| |||||| || ||| |||||| Sbjct 20735 ACCAAATGCAAAGTCGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCC 20676 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| ||| | ||||| |||| ||||||||||| || || || || ||||| | Sbjct 20675 AGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGG 20616 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| || | | ||||| | | || || || | |||||||| || Sbjct 20615 ATCTTGGCCTTCACATTTTCAATGGTGTCTGATGGCTCAACTTCCAAGGTGATGGTCTTG 20556 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| || || |||||||||||||| Sbjct 20555 CCAGTAAGTGTCTTGACAAAGATCTGCAT 20527 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || ||||| || | ||| ||||| || |||| |||||| Sbjct 19824 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTGCGACCATCCTC 19765 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| |||||| | || || | | ||||||||||| || || || || ||||| | Sbjct 19764 CAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 19705 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||| || ||| || |||| | || || |||| ||||||||||| Sbjct 19704 GATCTTGGCCTTCACATTCTCGATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTTTT 19645 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | ||| || |||||||||||||| Sbjct 19644 GCCGGTCAAAGTCTTGACAAAGATCTGCAT 19615 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || ||||| || | ||| ||||| || |||| |||||| Sbjct 20052 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTGCGACCATCCTC 19993 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| |||||| | || || | | ||||||||||| || || || || ||||| | Sbjct 19992 CAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 19933 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||| || ||| || |||| | || || |||| ||||||||||| Sbjct 19932 GATCTTGGCCTTCACATTCTCGATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTTTT 19873 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | ||| || |||||||||||||| Sbjct 19872 GCCGGTCAAAGTCTTGACAAAGATCTGCAT 19843 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || ||||| || | ||| || ||| || ||| |||||| Sbjct 20507 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 20448 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| ||| | ||||| | | ||||||||||| || || || || ||||| | Sbjct 20447 AGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGG 20388 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| ||||| ||| | | |||||| | | || || |||| |||||||| ||| Sbjct 20387 ATTTTAGCCTTTACGTTTTCAATAGTGTCCGAAGGCTCTACTTCAAGAGTGATGGTCTTT 20328 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | ||| || || || |||||||| Sbjct 20327 CCGGTCAAAGTCTTGACGAAAATCTGCAT 20299 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/217 (70%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || ||||| || | ||| ||||| || |||| |||||| Sbjct 21050 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTGCGACCATCCTC 20991 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| |||||| | || || | | ||||||||||| || || || || ||||| | Sbjct 20990 CAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 20931 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAG------CGTGG-TCGACGTCAATCGTGA 94970 ||||| ||||| ||| | | |||||| | | ||| || || |||| |||| Sbjct 20930 GATTTTCGCCTTTACGTTTTCAATAGTGTCCGAAGGCTCTTGGCTCCACCTCAAGAGTGA 20871 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || ||||| || | ||| || || || |||||||| Sbjct 20870 TTGTCTTTCCGGTCAAAGTCTTTACGAAAATCTGCAT 20834 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || ||||| || | ||| || ||| || ||| |||||| Sbjct 19595 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 19536 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| ||| | ||||| | | ||||||||||| || || || || || || | Sbjct 19535 AGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATGCCCTCCTTATCCTGG 19476 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| ||||| || | | || || | | | || || || | || ||||| ||| Sbjct 19475 ATTTTGGCCTTCACATTCTCAATCGTATCGGAGGGCTCCACCTCCAAAGTAATGGTCTTT 19416 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | || ||||||||||||||||| Sbjct 19415 CCAGTCAAGGTCTTCACAAAGATCTGCAT 19387 >seq2 Length=2985096 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||||||||| ||||| || | || || ||| || |||| Sbjct 124181 CGCAGGACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGACAAAGTGCGTCCG 124122 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||| ||| |||||| | ||||| || | ||||| ||||| ||||| || || ||| Sbjct 124121 TCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGAATGCCCTCCTTG 124062 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| ||| ||| || || | | || || || | |||||| Sbjct 124061 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATG 124002 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || ||||| ||||||||||| Sbjct 124001 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 123967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448242560404800