Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5896 159 5e-35 seq5389 98.7 2e-16 seq3275 98.7 2e-16 >seq5896 Length=454034 Score = 159 bits (176), Expect = 5e-35 Identities = 181/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || || |||||||| || || ||||| |||||||| || Sbjct 12302 CGCCAAGCGTCATCGCAAAGTGCTGCGGGATAACATTCAGGGTATCACTAAGCCAGCAAT 12361 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||||||||| || || || ||||| |||| ||| | | || || || | Sbjct 12362 CCGCCGTTTGGCTCGTCGCGGCGGTGTAAAGCGCATCTCGGGACTCATTTACGAGGAAAC 12421 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||| | ||| | ||| |||||||| ||||| || ||| ||||| Sbjct 12422 ACGTGGCGTCCTGAAGGTGTTCTTGGAGAACGTTATCCGCGATGCCGTCACCTACACCGA 12481 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||||||||| |||||||| | || || || ||||| | ||||| Sbjct 12482 ACACGCCAAGAGGAAGACTGTCACAGCCATGGATGTTGTGTACGCCTTGAAGAGGCAAGG 12541 Query 16672 CCG 16674 ||| Sbjct 12542 CCG 12544 Score = 159 bits (176), Expect = 5e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || || |||||||||||||| ||||| ||||| ||||| Sbjct 17441 CGCCAAGCGTCATCGCAAAGTGCTGCGTGATAACATCCAAGGTATCACGAAGCCTGCTAT 17500 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||| ||||| || || || ||||| | |||||| | | || || || | Sbjct 17501 CCGCCGTTTGGCCCGTCGAGGCGGTGTGAAGCGCATATCTGGACTCATATACGAGGAAAC 17560 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | ||| | ||| ||| || | |||||| | ||| || || Sbjct 17561 GCGTGGCGTTCTGAAGGTTTTCTTGGAGAACGTAATTCGTGATGCCGTGACCTACACGGA 17620 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||||||||| |||||||| | || || || ||||| | ||||| Sbjct 17621 ACACGCCAAGAGGAAGACTGTCACAGCCATGGATGTTGTGTACGCCTTGAAGAGGCAAGG 17680 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || ||||| ||||| Sbjct 17681 CCGCACCCTCTACGGATTTGGCGGTTAA 17708 Score = 154 bits (170), Expect = 2e-33 Identities = 180/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || || |||||||| || || ||||| |||||||| || Sbjct 4848 CGCCAAGCGTCATCGCAAAGTGCTGCGGGATAACATTCAGGGTATCACTAAGCCAGCAAT 4907 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||||||||| || || || ||||| |||| ||| | | || || || | Sbjct 4908 CCGCCGTTTGGCTCGTCGCGGCGGTGTAAAGCGCATCTCGGGACTCATTTACGAGGAAAC 4967 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||| | ||| | ||| |||||||| ||||| || ||| ||||| Sbjct 4968 ACGTGGCGTCCTGAAGGTGTTCTTGGAGAACGTTATCCGCGATGCCGTCACCTACACCGA 5027 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||||||||| |||||||| | || || || || || | ||||| Sbjct 5028 ACACGCCAAGAGGAAGACTGTCACAGCCATGGATGTTGTGTACGCCTTAAAGAGGCAAGG 5087 Query 16672 CCG 16674 ||| Sbjct 5088 CCG 5090 >seq5389 Length=105079 Score = 98.7 bits (108), Expect = 2e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| || || ||||||||||| || ||||||||||| ||||| Sbjct 68464 CGCCAAGCGTCATCGCAAGGTGCTCCGTGATAACATCCAGGGTATCACCAAGCCCGCTAT 68405 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| |||| ||||| || || || |||||| ||||||| || | || || || | Sbjct 68404 TCGCCGTTTGGCCCGTCGCGGCGGTGTGAAGCGTATCTCTGGCCTGATTTACGAGGAAAC 68345 Query 16552 TCGTGATGT 16560 ||| | ||| Sbjct 68344 TCGCGGTGT 68336 >seq3275 Length=287013 Score = 98.7 bits (108), Expect = 2e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| || || ||||||||||| || ||||||||||| ||||| Sbjct 46026 CGCCAAGCGTCATCGCAAGGTGCTCCGTGATAACATCCAGGGTATCACCAAGCCCGCTAT 46085 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| |||| ||||| || || || |||||| ||||||| || | || || || | Sbjct 46086 TCGCCGTTTGGCCCGTCGCGGCGGTGTGAAGCGTATCTCTGGCCTGATTTACGAGGAAAC 46145 Query 16552 TCGTGATGT 16560 ||| | ||| Sbjct 46146 TCGCGGTGT 46154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79067263815240