Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 369 5e-97 seq4563 156 5e-33 >seq1 Length=22559587 Score = 369 bits (408), Expect = 5e-97 Identities = 1217/1884 (65%), Gaps = 30/1884 (2%) Strand=Plus/Plus Query 61982 ATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGT---TTCGTACGTAGATAGTA 62038 || |||||| | ||||| ||||| |||| ||| | | || || || || || || Sbjct 20041581 ATTCTTGTCTACAGTGAACTGAAT---AGCGTTTGCAGCTGGCTTTGTGCGCAGGTAATA 20041637 Query 62039 CATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATA 62098 |||||| ||||||||||| |||| ||||| || || || ||||| || Sbjct 20041638 CATTCCAGTTTTTAGACCAGCTTTCCAGGAATAAAAGTGTATGGAAGTAAGTTTTCCGTA 20041697 Query 62099 ACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTC 62158 | || ||||| | ||| || || | || ||||| ||||| || || || || | || Sbjct 20041698 GTTTGGCTCTGCCACATGAATGTTGAACGACTGACTCTGATCTATAAACGCACCTCGATC 20041757 Query 62159 TGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCT 62217 ||| ||||| || || | | |||| || |||||||| | |||||| || | |||| Sbjct 20041758 TGCGGCCATCTTAATAGTGGACTTTACTGAGATTTCCCACACAGTTTTGTACAGATCGCG 20041817 Query 62218 TAATATCTTCTGGAAGGTTTG--TATTCTGAATGGATCCACCATCTGCCA-TAATCCTAT 62274 | ||| ||| || | |||| || || || || || ||| | | || | Sbjct 20041818 AACCTTCTGGGGGATGGCCTCAATATTTTGGATTGAGCC-CCTGCTGGAAATGATTTGGT 20041876 Query 62275 TCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAA 62334 |||| || || || | ||| || | ||| |||| | || | | ||| | |||| Sbjct 20041877 TCTTCATATCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGTTAA 20041936 Query 62335 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 62394 | ||||| ||||||||||||| |||| || || |||||||| | || || || || | Sbjct 20041937 CCACTTGGAATTCTCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTGTAAGGCTCGA 20041996 Query 62395 CCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 62454 || || || || |||| |||||||||||| || ||||| |||||||| || ||||| | Sbjct 20041997 ATGATTCGTTGTTACCCATAATTTGAGCAGTAGAAGCAGTGGGCATAGGAGCAACCAACA 20042056 Query 62455 AACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGAT 62514 || | | ||||| | |||| || || || | ||| | |||||| | Sbjct 20042057 GGGAGTTCCGGACACCGTGCTTCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGT 20042116 Query 62515 CCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTA 62574 || || | || ||||| || || || || ||| Sbjct 20042117 TCGTTGGCTCTTTGTCCCACATGTCGTACTGCAGAATTCCTTTGCTCACGGGGCTTCCCT 20042176 Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||| || || ||||| ||||| ||| || ||||||||||| || || || || |||| Sbjct 20042177 CATAGGTTTCATATGGACCTTCGATCTGGGCCAGTTCACAACTGGCTTCCAAAGCGCCGT 20042236 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATCAAATGGA 62693 | || || |||||||| |||| || ||| | || | ||||| || ||| | || Sbjct 20042237 AGTAGATAGTTTCGAAAATCTGCTGATTCAAGAGGCCG-GCTTCATCACTTTCATAGGGG 20042295 Query 62694 TAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62753 | | |||||| || ||||| || ||||| || ||||| || || | || | ||| Sbjct 20042296 AACCGCATGAGAATCAAGGCGTCAGCGAATCCCTGGACACCGATGCCCACGGGACGATGC 20042355 Query 62754 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 62813 ||| ||| || | | || ||||| | || || | |||||||| || || || || Sbjct 20042356 CTCAAATTGGATTTCTTGGCCTCTGGCAGGGGGTAGAAGTTAATATCGATTATCTTGTTA 20042415 Query 62814 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCT 62873 ||||| || || ||| || ||||| ||||| ||||| || | || Sbjct 20042416 AGATTCTTGGTAACCGTCTTGGTAACTTCCTTAAGTTTCTTGAAATCGTATGTCTTCTCG 20042475 Query 62874 A---TTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 62930 | ||||||||||| | ||| | ||||||| || ||||| || | ||||| | | Sbjct 20042476 GGAGTGACAAACATGTTGAGGGCGATGGATGCCAAGTTGCAAACTGCAATCTCATCCGGA 20042535 Query 62931 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGT 62990 | | ||| | || || || ||||| | ||| ||||||||||| || || | ||| || Sbjct 20042536 GCGGAATACTCTACGATTTCTGTGCACAAATTGCTACACTTGATGGTGCCGACATTCTGC 20042595 Query 62991 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 63050 || || ||||| |||| || ||||||||| | | ||| | || | |||||||| | | Sbjct 20042596 TGGTTGCTCTTCCTGTTGCAGGCATCCTTAAACAACATGTAGGGGTTTCCAGTTTCGACC 20042655 Query 63051 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTAT-CTCCT 63109 || | ||| ||||| || ||| | | | ||||||| | || | ||| | | Sbjct 20042656 TGTGCTTCAATAATGGCAAACCACAGGGATTGAGCCTTAAC---AGTTCTGTTGGCACGA 20042712 Query 63110 TTCTCTTTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 63167 ||||| | ||| | |||||| |||||| || || ||||| |||| || | Sbjct 20042713 CCCTCTTGCTCATATTTCTCATACAACTTTTCGAATTCATCGCCCCACACATCGTGAAGC 20042772 Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| |||| || || ||||| | |||||| ||||| | ||| || || |||||| Sbjct 20042773 CCAGGGCATTTATGTGGGCACATTAGCGACCAATCTCCATTGGCCTCGACGCGCTTCATA 20042832 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 |||||||| || ||||| || || ||| ||||| | || | || |||||| || || Sbjct 20042833 AAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGGGCCCGATTTTCCTCCTTGCCG 20042892 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 || || || ||||| || |||||| | | | ||| || ||||| || |||| ||| ||| Sbjct 20042893 GTGTTTTTCTTAAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATG 20042952 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | || || || ||| ||||| ||||| | || | || || || | Sbjct 20042953 GCAAAGGCACCGGGACGCTTGCCACCTCCTTGATCCACATAACGCGCCACATTGTTGAAG 20043012 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 || |||||||| |||| | || || ||| | ||||| || ||| | || || | || Sbjct 20043013 ACCCTCAACATGGGAACCAAGCCATTGGATGTGCCATTCGTTCCGCAAATCGAGGTGCCC 20043072 Query 63468 CTGGCACGAATATTACTAATTGA----TAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63523 | || || || ||| || || || || || || ||| ||| ||||| || Sbjct 20043073 TTTGCCCGGAT----GCAATGGACGTTAAGTCCAATGCCGCCGGCCGATTTCGAGATCAA 20043128 Query 63524 TGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAG 63583 || || ||| | | | | | || ||||| || || | ||||| | | || Sbjct 20043129 GGCACACTGTTCCACGGACTTAAAAATGCCCTCGATAGAGTCGGCCGTCATGGTCAAGAG 20043188 Query 63584 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63643 || || |||| || | ||| | || | || ||| | || || || || || Sbjct 20043189 GAAGCAAGACGACAGCTGCGGGCGATTTGTGGCAGCGGCAAAAAGTGTTGGCGACGCATG 20043248 Query 63644 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63703 ||| || || || || | ||||| || || || | || | ||||||||| Sbjct 20043249 CGTGAAGTATCGCTCCGACAAGAGATTATAAGTTTCCACGGCCGCATCTATATCCTCCCC 20043308 Query 63704 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63763 ||| ||||| | || || ||||| ||||| || || || | || | || || ||| Sbjct 20043309 ATGGATTCCGATCGCCACGCGCATCAACATATGTTGCGGACGCTCTGCAATTTTTCCGTT 20043368 Query 63764 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63823 | | |||| || ||||| ||| | || ||||| ||||| ||||| || |||||| Sbjct 20043369 TCTCTTCAGCAGATAGGAACGTTCTAGGGTCTTAAACCCAAAGTAGTTATACCCAAAGTC 20043428 Query 63824 TCGTTCGTAAATAATAACCGAGTT 63847 || ||||| || ||| ||||| Sbjct 20043429 GCGGTCGTAGATTATAGAAGAGTT 20043452 >seq4563 Length=14502029 Score = 156 bits (172), Expect = 5e-33 Identities = 474/730 (65%), Gaps = 3/730 (0%) Strand=Plus/Minus Query 33004 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33063 |||||||| ||||| || ||||| || || || || || || ||||| |||| Sbjct 3739895 ACTCCCATGCGCTGGTACTCGCCCACCTTCTTCTCAAAGAAGTTCGTCTTTCCGTCCAGC 3739836 Query 33064 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 33123 || || | |||||||| | ||| || || | ||| || ||||| || | ||| Sbjct 3739835 GAGATCATCTCCATGAAGTTAAAGGGGTTCTTGGTATTGTAGATTTTGCCAACGCTCAAC 3739776 Query 33124 TCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33183 || | || || ||||| |||||||| || || ||| | || || ||||| Sbjct 3739775 TCCACCAGCAGTCGGTCCGCCACGAATTCAATGTACTGCGACATAAGATCGCAGTTCATG 3739716 Query 33184 CCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCT 33243 || || || || || || | || | || | || || || ||||||| |||||||| Sbjct 3739715 CCGATGAGGTTTACGGGCAAGGCATCGGTTAAGAACTCCTGCTCAATGGCCACCGCATCG 3739656 Query 33244 GTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAA 33303 || || | | | || || ||| | |||| || || | ||||||| Sbjct 3739655 CGGATGATCTCGATGATGCGCTCGCGCCTGGGTCGCTGCACCAAGTGCTGGAACATCAGC 3739596 Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || ||||| |||| |||||||| | || || |||||||| || || ||| Sbjct 3739595 ACGGCAAAGTCGCAATGCAAGCCCTCGTCGCGGGAGATAAGCTCGTTGGAGAAGGTCAGT 3739536 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || ||||| || ||||| || ||||| || || || |||||| Sbjct 3739535 CCCGGCATCAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAG 3739476 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGTA- 33481 || || || || ||||| |||||||| | | ||| || || ||| | | | | | Sbjct 3739475 ATGCCCTCGACGGCAGCGAAGGCAATGATGCGCTCCCCGAAATTGGCCGATTTGGAGGAG 3739416 Query 33482 -TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 |||| | ||||| || ||||| || ||| ||||| || || ||||| || Sbjct 3739415 ATCCAGGAAAGGGCCCAGTCCGCCTTGCGCTTCACAGCCGGCATTGTCTCGATGGCGTTG 3739356 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 || || |||| | || ||| | ||||| ||||||| | ||| |||||| Sbjct 3739355 AACAGGTAGTCCCGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATT 3739296 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 ||||| || | ||| || ||||| || || || || ||||| || | |||||| || ||| Sbjct 3739295 TCCGAGTGCACGTTCTCCATGGCGATTTGGAAGCCATAGAAGCACCGAGCCTCCGTGATC 3739236 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 || || || || || || ||| ||| || || ||||| || || || || ||| Sbjct 3739235 TGCACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTCACGATGCCATCGGATGCGGCA 3739176 Query 33721 AAAAACGCCA 33730 || || |||| Sbjct 3739175 AAGAAGGCCA 3739166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622879610228800