Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq3325 113 4e-20 seq1 96.9 3e-15 seq2 91.5 1e-13 seq4812 87.8 1e-12 >seq3325 Length=21082 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||||| || ||| ||||| Sbjct 20510 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCC 20451 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| ||||||||| || | ||||| ||||| || || || | |||||| ||||| Sbjct 20450 TCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCC 20391 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||| || | | | |||||| ||||| ||| | |||||||| Sbjct 20390 TGGATTTTAGCCTTTACGTTTTCAATAGTGTCCGAAGGCTCTACTTCAAGAGTGATGGTC 20331 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||||| || ||||| ||||||||||| Sbjct 20330 TTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 20299 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||||| || ||| ||||| Sbjct 19598 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCC 19539 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| ||||||||| || | ||||| ||||| || || || | |||||| || || Sbjct 19538 TCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATGCCCTCCTTATCC 19479 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| |||||| | | | || ||| ||||||| |||| || ||||| Sbjct 19478 TGGATTTTGGCCTTCACATTCTCAATCGTATCGGAGGGCTCCACCTCCAAAGTAATGGTC 19419 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||||| |||| || || ||||| |||||||||||| Sbjct 19418 TTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTTG 19383 >seq1 Length=22559587 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||||| || |||| | ||||| Sbjct 1136960 AGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCGTCC 1137019 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || | || || ||||| || || || | ||||| ||||| Sbjct 1137020 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCC 1137079 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||| |||||| |||| |||||||| Sbjct 1137080 TGGATCTTGGC--CTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGG 1137137 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || ||||| || || || ||||| Sbjct 1137138 TCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 1137171 >seq2 Length=2985096 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || ||||||||||| || ||||||||||||| | Sbjct 123965 CCTCCACGGAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 123906 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||||||| || || || || | || || ||||| ||||| || Sbjct 123905 AAAGTGCGTCCATCCTCCAACTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGA 123846 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | || ||| ||||| Sbjct 123845 ATGCCCTCCTTGTCCTGGATCTTGGC--CTTAACATTCTCGATGGTATCGGAAGGCTCAA 123788 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| |||||||| || || ||||| ||||| || ||||| ||||| ||| Sbjct 123787 CCTCCAAAGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATTTGCATGTTG 123735 >seq4812 Length=908733 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||||| || || || |||||||| || ||||||||||||| || ||| ||||| Sbjct 620302 AGTACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCC 620361 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| ||||||||| || | ||||| ||||| || || || | ||||| ||||| Sbjct 620362 TCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCT 620421 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| |||||| |||| |||||||| Sbjct 620422 TGGATCTTGGC--CTTGACGTTTTCAATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGG 620479 Query 16902 TTTTTCCGGTCAGCGTTTT 16920 | || || || || ||||| Sbjct 620480 TCTTGCCAGTAAGAGTTTT 620498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405045146753200