Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq7033 134 9e-27 seq5252 127 1e-24 seq3325 122 6e-23 seq2 116 2e-21 seq5061 98.7 7e-16 seq1 93.3 3e-14 seq4812 82.4 5e-11 >seq7033 Length=4374125 Score = 134 bits (148), Expect = 9e-27 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGC-CAAGCTGCAGGACTTACTTGA 6433 || |||||||| | || ||||| ||||| | | || |||||||||||| || | || Sbjct 63054 AATGAGCGCTTTGTTGTCAACGGTTCGCACGA-TGTGAACAAGCTGCAGGATTTGTTGGA 63112 Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTAT 6493 ||| || ||||||||||||||||| || | || ||||| || ||||||||| | | | Sbjct 63113 CGGTTTCATTCGCAAGTTTGTGCTTTGCCCCGAGTGCGACAATCCGGAGACCAACTTGAC 63172 Query 6494 TGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAA 6553 ||||||| |||||| | ||||| || ||| ||||| || ||||| | ||| || Sbjct 63173 TGTGTCTGCCAAGAACCAGACCATTTCGCAGTCGTGCAAGGCATGCGGCTTCCACGGTCT 63232 Query 6554 GCTGGA-TTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 |||| | ||| | |||||| | ||||| ||||| ||||||| |||||| Sbjct 63233 GCTGAAGGTTAAC-CACAAAGTGAACACGTTCATTGTGAAGAACCCTCCA 63281 >seq5252 Length=4647 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| |||||||| | |||||||| Sbjct 855 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGAAGATAGGGACAGTAGGAATCTCGT 914 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||| |||||||||||||||||||||| Sbjct 915 TAATCCATTCATACGCGTCACTAATTAGATGACGA 949 >seq3325 Length=21082 Score = 122 bits (134), Expect = 6e-23 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | |||||| ||||| ||| |||||| || || ||||||| Sbjct 19845 CATT-CCACCGCGTAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAAT 19787 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||||||| || | || || | || |||||||| || || || || || ||||| | Sbjct 19786 CAGACAAAGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTG 19727 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||||| || || |||||| || || ||||||||||| || ||||| | | Sbjct 19726 GGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCAGAAGGCT 19667 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| | || || ||||| || ||||| || || || || |||||||| Sbjct 19666 CAACTTCAAGAGTGATGGTTTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 19615 Score = 122 bits (134), Expect = 6e-23 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | |||||| ||||| ||| |||||| || || ||||||| Sbjct 20073 CATT-CCACCGCGTAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAAT 20015 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||||||| || | || || | || |||||||| || || || || || ||||| | Sbjct 20014 CAGACAAAGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTG 19955 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||||| || || |||||| || || ||||||||||| || ||||| | | Sbjct 19954 GGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCAGAAGGCT 19895 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| | || || ||||| || ||||| || || || || |||||||| Sbjct 19894 CAACTTCAAGAGTGATGGTTTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 19843 Score = 109 bits (120), Expect = 4e-19 Identities = 166/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | || ||| | ||||| || || || |||||| || || ||||| | Sbjct 19617 CATT-CCACCGCGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGT 19559 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | |||| ||| |||| || | |||||| ||||| || || || || || ||||| | Sbjct 19558 CGGACAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTG 19499 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||||| ||| || || ||| ||||| ||||||||||| | ||||| | Sbjct 19498 GGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTCACATTCTCAATCGTATCGGAGGGCT 19439 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || || || ||||| || || || |||||||| ||||| || |||||||| || Sbjct 19438 CCACCTCCAAAGTAATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 19384 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/239 (69%), Gaps = 8/239 (3%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | |||||| ||||| ||| |||||| || || ||||||| Sbjct 21071 CATT-CCACCGCGTAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAAT 21013 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||||||| || | || || | || |||||||| || || || || || ||||| | Sbjct 21012 CAGACAAAGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTG 20953 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATC----TCCA 38261 ||||| || || |||||| ||||| ||| || || | | ||| || | Sbjct 20952 GGGGGATTCCCTCCTTGTCCTGGATTTTCGCCTTTACGTTTTCAATAGTGTCCGAAGGCT 20893 Query 38262 CTT---TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || || || | || || || || || ||||| || || ||||| |||||||| Sbjct 20892 CTTGGCTCCACCTCAAGAGTGATTGTCTTTCCGGTCAAAGTCTTTACGAAAATCTGCAT 20834 >seq2 Length=2985096 Score = 116 bits (128), Expect = 2e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | ||| | |||||| || || ||| |||||| || || ||||| || | Sbjct 123967 TACCTCCACGGAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 123908 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| ||| | || || || || |||||||| || || || || || || || | || Sbjct 123907 ACAAAGTGCGTCCATCCTCCAACTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGG 123848 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||| || |||||| || || ||| ||||||| || ||||| | |||| Sbjct 123847 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCGATGGTATCGGAAGGCTCAA 123788 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || || || || || || || |||| |||||||||||| || |||||||| Sbjct 123787 CCTCCAAAGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATTTGCATGTT 123736 >seq5061 Length=120080 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 63278 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 63337 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 63338 GGTTATATTTAG 63349 Score = 95.1 bits (104), Expect = 8e-15 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| |||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 62009 CTCTCTATTCAGAGTTCTTTTCAACTTTTCCTCACGGTACTTGTTTACTATCGGTCTCAT 62068 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 62069 GGTTATATTTAG 62080 >seq1 Length=22559587 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || |||| |||||| || | |||| |||||| ||||| || || ||||| Sbjct 20155548 ACCACCACGCAGGCGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGA 20155489 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | || | || || | || || || || || || || || || ||||| | || Sbjct 20155488 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 20155429 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | |||||||||||| ||| || || ||||| | || |||||| | ||| || Sbjct 20155428 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGAC 20155369 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || ||||| | ||| |||||||| |||||||| || Sbjct 20155368 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATCTT 20155318 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || || | ||||| || || || |||||| || || ||||| || | Sbjct 1136943 TACCACCGCGCAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 1137002 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || |||| || | || || ||||| || || || || || ||||| | || Sbjct 1137003 ACAGGGTTCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 1137062 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || ||||||||||| || || || | || | Sbjct 1137063 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCA 1137122 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || || || || || || || || | |||||||||||| || |||||| Sbjct 1137123 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATG 1137172 >seq4812 Length=908733 Score = 82.4 bits (90), Expect = 5e-11 Identities = 115/160 (72%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | || ||| | ||||| || || || |||||| || || ||||||| Sbjct 620691 CATT-CCACCGCGCAGACGGAGTACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAAT 620749 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||||||| || |||| || | || |||||||| || || | || |||||||| | Sbjct 620750 CAGACAAAGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAAGATCAATCGCTGTTGATCTG 620809 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 ||||| || || |||||| || || ||||||||| Sbjct 620810 GGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 620849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334911766773080