Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4563 138 1e-27 seq3325 136 3e-27 seq4812 91.5 1e-13 seq1 82.4 7e-11 >seq4563 Length=14502029 Score = 138 bits (152), Expect = 1e-27 Identities = 204/289 (71%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 50989 AACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTCT 51048 ||||| ||||| || ||| |||||||| || | | |||| ||||| || || Sbjct 8076745 AACTTGCGCTTGCACCCCTGATAGTTCATGTATCGAACCTTGCCGAAAATGGCCCGCTCC 8076804 Query 51049 TTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAGGA 51108 || | | ||||||| | || | ||| |||||||| || || ||||| || ||| Sbjct 8076805 TTCCAGCCCATGTCGTGGATTCCCCCAATGGACCACATGCAGCCGACATATCCATTGGGA 8076864 Query 51109 TCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGTCT 51168 ||||| ||||| | |||||| | || || || | || ||||| ||| |||| || Sbjct 8076865 TCGCGTCCATCGAGGCTGTACTTGTCATTCAGGAGAATCGCATATTCCAGTGCCTCCTCA 8076924 Query 51169 GCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATC 51228 | | | ||||| || | ||| |||||||||||||||||||||| | || ||||| Sbjct 8076925 GGGGTGGCGGTCCACTCGAGAATCTTCTTGGCCCAGTACATGCGCAGAAAGCCATGCATT 8076984 Query 51229 TTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277 |||||||||| |||||| ||| ||||||||||||| ||||||| Sbjct 8076985 TTGCCCTCGCGCACCAGCTGCAGTTGCGCCGAGTTCCACAGGTCGTCGT 8077033 >seq3325 Length=21082 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||||||||||| ||| ||||||| | ||||| ||| | || Sbjct 19614 AATGCAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACTCTTGAAGTTGAGCCTTC 19673 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || |||||| ||||| || ||| ||||| || || || || || || || Sbjct 19674 TGATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 19733 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||| ||||| || || | || |||| ||||||| || |||||||| Sbjct 19734 GCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATTACAA 19793 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || ||||| || || || ||||| | ||| | || |||| Sbjct 19794 CATCCAGAAGGAGTCCACCCTTCACTTGGTGCTTCGTCTACGCGGTGGAA 19843 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||||||||||| ||| ||||||| | ||||| ||| | || Sbjct 19842 AATGCAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACTCTTGAAGTTGAGCCTTC 19901 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || |||||| ||||| || ||| ||||| || || || || || || || Sbjct 19902 TGATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 19961 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||| ||||| || || | || |||| ||||||| || |||||||| Sbjct 19962 GCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATTACAA 20021 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || ||||| || || || ||||| | ||| | || |||| Sbjct 20022 CATCCAGAAGGAGTCCACCCTTCACTTGGTGCTTCGTCTACGCGGTGGAA 20071 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| | ||||| ||| | || Sbjct 20299 ATGCAGATTTTCGTCAAGACTTTGACCGGAAAGACCATCACTCTTGAAGTAGAGCCTTCG 20358 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| |||||| ||||| || || || || || || || Sbjct 20359 GACACTATTGAAAACGTAAAGGCTAAAATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 20418 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| || |||||||||||| | || || | ||||| || ||| ||||| Sbjct 20419 CAGCGTCTTATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGACTACAAC 20478 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 20479 ATCCAGAAGGAGTCGACCCTCCACTTGGTCCT 20510 Score = 104 bits (114), Expect = 2e-17 Identities = 164/236 (69%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTG-------GA 25051 ||||| || || ||||||||||||||||| || | ||||| | || ||| || Sbjct 20834 ATGCAGATTTTCGTAAAGACTTTGACCGGAAAGACAATCACTCTTGAGGTGGAGCCAAGA 20893 Query 25052 GTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 | | || |||||||| || | ||| |||||| ||||| || || || || || Sbjct 20894 GCCTTCGGACACTATTGAAAACGTAAAGGCGAAAATCCAGGACAAGGAGGGAATCCCCCC 20953 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || || ||||| | ||||| ||||| || || | || |||| ||||||| || || Sbjct 20954 AGATCAGCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGA 21013 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||| || || || || ||||| || || || ||||| | ||| | || |||| Sbjct 21014 TTACAACATCCAGAAGGAGTCCACCCTTCACTTGGTGCTTCGTCTACGCGGTGGAA 21069 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| ||||| || || |||| || | || |||||| | || Sbjct 19386 AATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATTACTTTGGAGGTGGAGCCCTC 19445 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| ||||| |||||| || || || || || || || || || Sbjct 19446 CGATACGATTGAGAATGTGAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCAGATCA 19505 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| |||| || |||||||||||| | || || | ||||| || ||| ||||| Sbjct 19506 GCAGCGTCTTATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGACTACAA 19565 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 19566 CATCCAGAAGGAGTCGACCCTCCACTTGGTCCT 19598 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | || || || ||||||| | ||||| ||| | || Sbjct 20526 AATGCAGATCTTTGTCAAGACACTTACTGGCAAGACCATCACCTTGGAAGTTGAGCCATC 20585 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || ||||| || ||| ||||| || || || || || || || Sbjct 20586 AGACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCA 20645 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || |||||||||||| | || || | ||||| || ||||||||| Sbjct 20646 GCAGCGATTGATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGATTACAA 20705 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || | ||||| || || Sbjct 20706 CATCCAGAAGGAATCGACTTTGCATTTGGTTCT 20738 >seq4812 Length=908733 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||||||||| || |||| || | ||||| ||| | ||| Sbjct 620057 ATGCAAATCTTCGTGAAGACTTTGACCGGAAAGACCATTACTCTGGAAGTCGAGCCTTCT 619998 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || | ||| || ||| ||||| || || ||||| || ||||| Sbjct 619997 GATACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCCCCAGACCAG 619938 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| ||| | || || | ||||| || || ||||| Sbjct 619937 CAGCGTCTCATCTTCGCCGGCAAGCAACTGGAGGACGGACGCACCCTGTCTGACTACAAC 619878 Query 25179 ATTCAAAAAGAATCCACGCT 25198 || || || || || || || Sbjct 619877 ATCCAGAAGGAGTCGACCCT 619858 >seq1 Length=22559587 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || || | || Sbjct 20155321 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCTTCG 20155380 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| |||| |||| || | ||| ||||||||||| ||||| || || Sbjct 20155381 GATACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 20155436 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || || || ||||| || | ||||||| ||||| | || || Sbjct 20155437 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTA 20155496 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || ||||| | || || ||||| Sbjct 20155497 TAACATTCAGAAGGAGTCCACTTTGCACTTGGTGCT 20155532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433282159314200