Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30]
8,680 sequences; 232,923,092 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq4563 138 1e-27
seq3325 136 3e-27
seq4812 91.5 1e-13
seq1 82.4 7e-11
>seq4563
Length=14502029
Score = 138 bits (152), Expect = 1e-27
Identities = 204/289 (71%), Gaps = 0/289 (0%)
Strand=Plus/Plus
Query 50989 AACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTCT 51048
||||| ||||| || ||| |||||||| || | | |||| ||||| || ||
Sbjct 8076745 AACTTGCGCTTGCACCCCTGATAGTTCATGTATCGAACCTTGCCGAAAATGGCCCGCTCC 8076804
Query 51049 TTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAGGA 51108
|| | | ||||||| | || | ||| |||||||| || || ||||| || |||
Sbjct 8076805 TTCCAGCCCATGTCGTGGATTCCCCCAATGGACCACATGCAGCCGACATATCCATTGGGA 8076864
Query 51109 TCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGTCT 51168
||||| ||||| | |||||| | || || || | || ||||| ||| |||| ||
Sbjct 8076865 TCGCGTCCATCGAGGCTGTACTTGTCATTCAGGAGAATCGCATATTCCAGTGCCTCCTCA 8076924
Query 51169 GCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATC 51228
| | | ||||| || | ||| |||||||||||||||||||||| | || |||||
Sbjct 8076925 GGGGTGGCGGTCCACTCGAGAATCTTCTTGGCCCAGTACATGCGCAGAAAGCCATGCATT 8076984
Query 51229 TTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277
|||||||||| |||||| ||| ||||||||||||| |||||||
Sbjct 8076985 TTGCCCTCGCGCACCAGCTGCAGTTGCGCCGAGTTCCACAGGTCGTCGT 8077033
>seq3325
Length=21082
Score = 136 bits (150), Expect = 3e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| |||||||||||||| ||| ||||||| | ||||| ||| | ||
Sbjct 19614 AATGCAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACTCTTGAAGTTGAGCCTTC 19673
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||| || |||||| ||||| || ||| ||||| || || || || || || ||
Sbjct 19674 TGATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 19733
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | ||||| ||||| || || | || |||| ||||||| || ||||||||
Sbjct 19734 GCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATTACAA 19793
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|| || || || ||||| || || || ||||| | ||| | || ||||
Sbjct 19794 CATCCAGAAGGAGTCCACCCTTCACTTGGTGCTTCGTCTACGCGGTGGAA 19843
Score = 136 bits (150), Expect = 3e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| |||||||||||||| ||| ||||||| | ||||| ||| | ||
Sbjct 19842 AATGCAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACTCTTGAAGTTGAGCCTTC 19901
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||| || |||||| ||||| || ||| ||||| || || || || || || ||
Sbjct 19902 TGATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 19961
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | ||||| ||||| || || | || |||| ||||||| || ||||||||
Sbjct 19962 GCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATTACAA 20021
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|| || || || ||||| || || || ||||| | ||| | || ||||
Sbjct 20022 CATCCAGAAGGAGTCCACCCTTCACTTGGTGCTTCGTCTACGCGGTGGAA 20071
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||||||||||| || ||||||| | ||||| ||| | ||
Sbjct 20299 ATGCAGATTTTCGTCAAGACTTTGACCGGAAAGACCATCACTCTTGAAGTAGAGCCTTCG 20358
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|||||||| || | ||| |||||| ||||| || || || || || || ||
Sbjct 20359 GACACTATTGAAAACGTAAAGGCTAAAATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 20418
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| |||| || |||||||||||| | || || | ||||| || ||| |||||
Sbjct 20419 CAGCGTCTTATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGACTACAAC 20478
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || || || || || || ||
Sbjct 20479 ATCCAGAAGGAGTCGACCCTCCACTTGGTCCT 20510
Score = 104 bits (114), Expect = 2e-17
Identities = 164/236 (69%), Gaps = 7/236 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTG-------GA 25051
||||| || || ||||||||||||||||| || | ||||| | || ||| ||
Sbjct 20834 ATGCAGATTTTCGTAAAGACTTTGACCGGAAAGACAATCACTCTTGAGGTGGAGCCAAGA 20893
Query 25052 GTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111
| | || |||||||| || | ||| |||||| ||||| || || || || ||
Sbjct 20894 GCCTTCGGACACTATTGAAAACGTAAAGGCGAAAATCCAGGACAAGGAGGGAATCCCCCC 20953
Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171
|| || ||||| | ||||| ||||| || || | || |||| ||||||| || ||
Sbjct 20954 AGATCAGCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGA 21013
Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|||||| || || || || ||||| || || || ||||| | ||| | || ||||
Sbjct 21014 TTACAACATCCAGAAGGAGTCCACCCTTCACTTGGTGCTTCGTCTACGCGGTGGAA 21069
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| ||||| ||||| || || |||| || | || |||||| | ||
Sbjct 19386 AATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATTACTTTGGAGGTGGAGCCCTC 19445
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || ||| ||||| |||||| || || || || || || || || ||
Sbjct 19446 CGATACGATTGAGAATGTGAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCAGATCA 19505
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| |||| || |||||||||||| | || || | ||||| || ||| |||||
Sbjct 19506 GCAGCGTCTTATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGACTACAA 19565
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || || || || || || ||
Sbjct 19566 CATCCAGAAGGAGTCGACCCTCCACTTGGTCCT 19598
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| ||||| | || || || ||||||| | ||||| ||| | ||
Sbjct 20526 AATGCAGATCTTTGTCAAGACACTTACTGGCAAGACCATCACCTTGGAAGTTGAGCCATC 20585
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || || ||||| || ||| ||||| || || || || || || ||
Sbjct 20586 AGACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCA 20645
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || || |||||||||||| | || || | ||||| || |||||||||
Sbjct 20646 GCAGCGATTGATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGATTACAA 20705
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || ||||| || | ||||| || ||
Sbjct 20706 CATCCAGAAGGAATCGACTTTGCATTTGGTTCT 20738
>seq4812
Length=908733
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || |||||||||||||| || |||| || | ||||| ||| | |||
Sbjct 620057 ATGCAAATCTTCGTGAAGACTTTGACCGGAAAGACCATTACTCTGGAAGTCGAGCCTTCT 619998
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| || || || | ||| || ||| ||||| || || ||||| || |||||
Sbjct 619997 GATACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCCCCAGACCAG 619938
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || || |||||||| ||| | || || | ||||| || || |||||
Sbjct 619937 CAGCGTCTCATCTTCGCCGGCAAGCAACTGGAGGACGGACGCACCCTGTCTGACTACAAC 619878
Query 25179 ATTCAAAAAGAATCCACGCT 25198
|| || || || || || ||
Sbjct 619877 ATCCAGAAGGAGTCGACCCT 619858
>seq1
Length=22559587
Score = 82.4 bits (90), Expect = 7e-11
Identities = 149/216 (69%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || ||||||| | || || || | ||
Sbjct 20155321 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCTTCG 20155380
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| |||||||| |||| |||| || | ||| ||||||||||| ||||| || ||
Sbjct 20155381 GATACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 20155436
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| ||||| | || || || ||||| || | ||||||| ||||| | || ||
Sbjct 20155437 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTA 20155496
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||| || || ||||| | || || |||||
Sbjct 20155497 TAACATTCAGAAGGAGTCCACTTTGCACTTGGTGCT 20155532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433282159314200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |