Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4563 235 6e-57 seq1 113 5e-20 seq5605 111 2e-19 >seq4563 Length=14502029 Score = 235 bits (260), Expect = 6e-57 Identities = 550/824 (67%), Gaps = 8/824 (1%) Strand=Plus/Minus Query 92806 TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTC 92865 ||||| || || || || || |||||||| || |||||||| |||| || ||| | | Sbjct 3739883 TGGTACTCGCCCACCTTCTTCTCAAAGAAGTTCGTCTTTCCGTCCAGCGAGATCATCTCC 3739824 Query 92866 ACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAATAAT 92923 | | | | || ||||||| || || || || || ||||||| || | | Sbjct 3739823 ATGAAGTTAAAGGGGTTCTTGGTATTGTAGATTTTGCCAACGCTCAACTCCACCAGCAGT 3739764 Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 | || || || ||||| |||||||| ||||| | ||| || ||||| || | || | Sbjct 3739763 CGGTCCGCCACGAATTCAATGTACTGCGACATAAGATCGCAGTTCATGCCGATGAGGTTT 3739704 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 || || | || ||||| ||||| || | ||| || | || || || | ||| || Sbjct 3739703 ACGGGCAAGGCATCGGTTAAGAACTCCTGCTCAATGGCCACCGCATCGCGGATGATCTCG 3739644 Query 93044 ATTA--CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG-CAAAG 93100 || | | || ||| || || || | | | | |||| | ||||| ||||| Sbjct 3739643 ATGATGCGCTCGCGCCTGG--GTCGCTGCACCAAGTGCTGGAACATCA-GCACGGCAAAG 3739587 Query 93101 TCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAAC 93160 ||| ||| || || ||||| || || || | ||| ||| ||| || | || || | | Sbjct 3739586 TCGCAATGCAAGCCCTCGTCGCGGGAGATAAGCTCGTTGGAGAAGGTCAGTCCCGGCATC 3739527 Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220 || || || ||||| ||||| || || || ||||| || || || || || || || Sbjct 3739526 AGACCGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAGATGCCCTCG 3739467 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280 ||||| || || || | || || || | ||||| || || || | |||||| Sbjct 3739466 ACGGCAGCGAAGGCAATGATGCGCTCCCCGAAATTGGCCGATTTGGAGGAGATCCAGGAA 3739407 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340 | ||||| || || || ||| | | || | ||| ||||| ||||| || ||||| Sbjct 3739406 AGGGCCCAGTCCGCCTTGCGCTTCACAGCCGGCATTGTCTCGATGGCGTTGAACAGGTAG 3739347 Query 93341 TCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGG 93400 || |||| | || ||| || ||||| || ||||| | || | |||||||| || || Sbjct 3739346 TCCCGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATTTCCGAGTGC 3739287 Query 93401 ACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCT 93460 || |||||||| || |||||||| || ||||| || | ||| |||||||||||||| || Sbjct 3739286 ACGTTCTCCATGGCGATTTGGAAGCCATAGAAGCACCGAGCCTCCGTGATCTGCACCTCC 3739227 Query 93461 TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCC 93520 ||| || | ||| || || || || || || || ||||||||||| ||||| || ||| Sbjct 3739226 TGACTGAAGCGCTCCACCAGGTTCTCGTTCACGATGCCATCGGATGCGGCAAAGAAGGCC 3739167 Query 93521 AATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCT 93580 | | ||| || || || || || || || || | ||| |||| || || Sbjct 3739166 AGCACGTGCGAGATGAAGTGACGTTCGTCGTCCTTCAGGCGGTGCCAGTCGGTCAGGTCC 3739107 Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || || ||||| || || || || ||||| || || || || || Sbjct 3739106 TTGGACAGATCCACCTCCTCCACGGTCCAGAAAGAGGCCTCAGC 3739063 >seq1 Length=22559587 Score = 113 bits (124), Expect = 5e-20 Identities = 79/89 (89%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 |||| ||||||||||||| |||||||||||||||||||||| |||||||| | | || Sbjct 2425811 ACAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGA 2425752 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||| |||| Sbjct 2425751 GCGTGGGTTCGAACCCCACACCTGGCAAA 2425723 >seq5605 Length=440438 Score = 111 bits (122), Expect = 2e-19 Identities = 78/88 (89%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||| ||||||||||||| |||||||||||||||||||||| |||||||| | | ||| Sbjct 143283 CAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGTGAGAGAG 143224 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||| |||| Sbjct 143223 CGTGGGTTCGAACCCCACACCTGGCAAA 143196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556800380603200