Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4563 311 2e-79 seq1 233 4e-56 >seq4563 Length=14502029 Score = 311 bits (344), Expect = 2e-79 Identities = 570/821 (69%), Gaps = 23/821 (3%) Strand=Plus/Plus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394 |||||||| |||||| | || ||| |||||||| | ||| |||| ||| | |||| Sbjct 3739077 CTGGACCGTGGAGGAGGTGGATCTGTCCAAGGACCTGACCGACTGG----CACCGCCTGA 3739132 Query 42395 -GAACGA--AAAGTTT-TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCA 42450 | |||| || || ||| || || | ||||||||||| ||||| || || |||| Sbjct 3739133 AGGACGACGAACGTCACTTCATCTCGCACGTGCTGGCCTTCTTTGCCGCATCCGATGGCA 3739192 Query 42451 TAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCT 42510 | || || |||||||||| | |||| | ||||||||| | ||||| || | Sbjct 3739193 TCGTGAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGCTCGGT 3739252 Query 42511 GCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC 42570 ||||||| |||||||| || ||||| |||||||||||||| || ||||| ||| Sbjct 3739253 GCTTCTATGGCTTCCAAATCGCCATGGAGAACGTGCACTCGGAAATGTACAGTGTGCTGA 3739312 Query 42571 TCAACACGTACATCCTGGATCC-CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACG 42629 || |||| ||||||| |||||| | || |||| || |||||||| ||||| ||||| Sbjct 3739313 TCGACACTTACATCCGGGATCCGCATC-AGCGGGACTACCTGTTCAACGCCATCGAGACA 3739371 Query 42630 ATGCC--CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-- 42685 ||||| ||| | ||| |||||||||||||| || ||||||| ||| | Sbjct 3739372 ATGCCGGCTG--TGAAGCGCAAGGCGGACTGGGCCCTTTCCTGGATC--TCCTCCAAATC 3739427 Query 42686 CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGG 42745 || | ||||| ||| | | | ||||| | ||||||||||||||||||||| || Sbjct 3739428 GGCCAATTTCGGGGAGCGCATCATTGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGG 3739487 Query 42746 CGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCT 42804 | ||| |||||||| |||||||| ||| || ||| | |||||| ||||| ||||||| Sbjct 3739488 CAGCTTTGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCT-GATGCCGGGACTGACCTTCT 3739546 Query 42805 CGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCT 42864 | ||||| || ||| | | |||||||| ||||| | ||||||||| || ||||| Sbjct 3739547 CCAACGAGCTTATCTCCCGCGACGAGGGCTTGCATTGCGACTTTGCCGTGCTGATGTTCC 3739606 Query 42865 CGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCG 42924 | ||| | ||| ||| | ||||| || | |||||| || || | Sbjct 3739607 AG---CACTTGGTGCAGCGACCCAGGCGCGAGCGCATCATCGAGATCATCCGCGATGCGG 3739663 Query 42925 TGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACC 42984 ||| || ||| |||||||| | || | | ||||||| ||| ||||||||||| Sbjct 3739664 TGGCCATTGAGCAGGAGTTCTTAACCGATGCCTTGCCCGTAAACCTCATCGGCATGAACT 3739723 Query 42985 ACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTC 43044 ||| || |||| ||||||| | | ||| || |||| || ||| || || | Sbjct 3739724 GCGATCTTATGTCGCAGTACATTGAATTCGTGGCGGACCGACTGCTGGTGGAGTTGAGCG 3739783 Query 43045 TCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGG 43104 | || ||||||| || | |||||| |||| ||||||| |||||| |||| | Sbjct 3739784 TTGGCAAAATCTACAATACCAAGAACCCCTTTAACTTCATGGAGATGATCTCGCTGGACG 3739843 Query 43105 GCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 | ||||| ||||| || |||||| || | ||| |||||| Sbjct 3739844 GAAAGACGAACTTCTTTGAGAAGAAGGTGGGCGAGTACCAG 3739884 >seq1 Length=22559587 Score = 233 bits (258), Expect = 4e-56 Identities = 711/1089 (65%), Gaps = 36/1089 (3%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGC-- 244147 ||| ||||| || || ||||| ||||| || || | ||||| | | | || | Sbjct 20041932 GTTAACCACTTGGAATTCTCCAGACAGAACTCGCC--TGGTATAAATATTCGTTGTGTAA 20041989 Query 244148 GGCTCGA-TGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGA 244206 ||||||| || | || |||| |||| || || || || ||||| ||||| || | Sbjct 20041990 GGCTCGAATGAT-TCGTTGTTACCCATAATTTGAGCAGTAGAAGCAGTGGGCATAGGAGC 20042048 Query 244207 CACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC--TGAGCTCGTTCCAG 244264 |||| ||| ||||| || |||||| ||| |||| || || | || | | |||| Sbjct 20042049 AACCAACAGGGAGTTCCGGACACCGTGCTTCTTGATG--GACTCCTTCAGTTTCTGCCAG 20042106 Query 244265 TCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCC 244324 ||||| | | || | || |||| |||||||||| ||||||| | || Sbjct 20042107 TCCCAAAGGTTCGTTGGCTC------TTTGT---CCCACATGTCGTACTGCAGAATTCCT 20042157 Query 244325 TTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAG 244384 ||||| |||||||| ||||| ||||| || ||||| ||| ||||||||| | ||| Sbjct 20042158 TTGCTCACGGGGCTTCCCTCATAGGTTTCATATGGACCTTCGATCTGGGCCAGTTCACAA 20042217 Query 244385 CTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCC 244444 || | || | ||| |||||||||| || ||||| ||| || |||| | || ||| Sbjct 20042218 CTGGCTTCCAAAGCGCCGTAGTAGATAGTTTCGAAAATCTGCTGATTCAAGAGGCCGGCT 20042277 Query 244445 TTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCG 244504 | | | |||||| | ||| | || ||| |||| || | |||||| || ||| Sbjct 20042278 TCATCACTTTCATAGGGGAACCGCATGAGAATCAAGGCGTCAGCGAATCCCTGGACACCG 20042337 Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTG 244564 ||||| | ||| | || | | ||||| | |||| || |||| |||||| ||||| Sbjct 20042338 ATGCCCACGGGACGATGCCTCAAATTGGATTTCTTGGCCTCTGGCAGGGGGTAGAAGTTA 20042397 Query 244565 CCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCT-G 244623 ||||| | |||||| || || ||| | | | | || || || || | Sbjct 20042398 ATATCGATTATCTTGTTAAGATTCTTGGTAACCGTCTTGGTAACTTCCTTAAGTTTCTTG 20042457 Query 244624 AAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGAC 244683 ||| ||||| | | ||||| || |||| ||||| ||||||||||| Sbjct 20042458 AAA-------TCGTATGTCTTCTCGG-GA--GTGA------CAAACATGTTGAGGGCGAT 20042501 Query 244684 GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCA 244743 | |||| |||||| || || | ||| |||| || |||| || || || ||||| Sbjct 20042502 GGATGCCAAGTTGCAAACTGCAATCTCATCCGGAGCGGAATACTCTACGATTTCTGTGCA 20042561 Query 244744 GAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTC 244803 | || || |||||||||||||| | | ||| || ||| ||| ||||||||| || Sbjct 20042562 CAAATTGCTACACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATC 20042621 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863 ||| | | |||| |||| || || |||| ||| || | | | | ||| || Sbjct 20042622 CTTAAACAACATGTAGGGGTTTCCAGTTTCGACCTGTGCTTCAATAATGGCAAACCACAG 20042681 Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGC 244923 | |||||| || || ||| || |||||| ||| || |||| Sbjct 20042682 GGATTGAGCCTTAACAGTTCTGTTGGCACGACCCTCTTGCTCATATTTCTCATACAACTT 20042741 Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983 ||||| || |||||| || |||| || || ||||| |||||||| || Sbjct 20042742 TTCGAATTCATCGCCCCACACATCGTGAAGCCCAGGGCATTTATGTGGGCACATTAGCGA 20042801 Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 ||| || || | ||| ||| | || ||| ||||| ||||| ||||| ||||| | || Sbjct 20042802 CCAATCTCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCACAGGGCGTAAAA 20042861 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 || || | || || | || ||| ||| ||||| ||| | || |||| || ||||| Sbjct 20042862 CAGATCGCGGGCCCGATTTTCCTCCTTGCCGGTGTTTTTCTTAAGTTCCAGGAACTCAAA 20042921 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 ||| || |||||||||||||| ||| | || | ||| ||||| |||||| ||||| Sbjct 20042922 GACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCACCTCC 20042981 Query 245164 CTGGTCCAC 245172 || ||||| Sbjct 20042982 TTGATCCAC 20042990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944236739196800