Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq4563 141 7e-29 seq8168 104 2e-17 seq5061 104 2e-17 seq4896 104 2e-17 seq1 86.0 5e-12 >seq4563 Length=14502029 Score = 141 bits (156), Expect = 7e-29 Identities = 209/295 (71%), Gaps = 1/295 (0%) Strand=Plus/Minus Query 37840 TGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGTATATGCGCA 37899 |||||||| |||| ||| | ||||| ||||||||||| || |||||| | | |||||| Sbjct 8077024 TGTGGAACTCGGCGCAACTGCAGCTGGTGCGCGAGGGCAAAATGCATGGCTTTCTGCGCA 8076965 Query 37900 TGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACCGCGCTCAACTACG 37959 |||| ||| |||||| ||| | || ||| | | || || || || | || | Sbjct 8076964 TGTACTGGGCCAAGAAGATTCTCGAGTGGACCGCCACCCCTGAGGAGGCACTGGAATATG 8076905 Query 37960 CCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGGTTACGTCGGCT 38019 | ||| || ||||| ||||||||| | || || || |||||||| || || ||||||| Sbjct 8076904 CGATTCTCCTGAATGACAAGTACAGCCTCGATGGACGCGATCCCAATGGATATGTCGGCT 8076845 Query 38020 GTTTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCGCGAGATTCCCATTTACGGCA 38079 | ||||||| || | || | ||||| | | |||| ||| |||||| ||||| Sbjct 8076844 GCATGTGGTCCATTGGGGGAATCCACGACATGGGCTGGAAGGAGCGGGCCATTTTCGGCA 8076785 Query 38080 AGATTCGGTACATGAACTACAACGGATGTGTTAGGAAGTTTAATGTTAAC-CATT 38133 || |||| ||||||||||| | || || | ||||| |||||||| |||| Sbjct 8076784 AGGTTCGATACATGAACTATCAGGGGTGCAAGCGCAAGTTCGATGTTAACGCATT 8076730 >seq8168 Length=950709 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 559103 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 559044 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 559043 ATAACTGATATAATGAGCCTTTTGCGGTTTC 559013 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 559103 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 559044 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 559043 ATAACTGATATAATGAGCCTTTTGCGGTTTC 559013 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 562201 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 562142 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 562141 ATAACTGATATAATGAGCCTTTTGCGGTTTC 562111 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 562201 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 562142 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 562141 ATAACTGATATAATGAGCCTTTTGCGGTTTC 562111 >seq5061 Length=120080 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 67449 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 67508 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 67509 ATAACTGATATAATGAGCCTTTTGCGGTTTC 67539 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 67449 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 67508 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 67509 ATAACTGATATAATGAGCCTTTTGCGGTTTC 67539 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/96 (83%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| ||||||||||||| || | |||||||||||| Sbjct 57136 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAATTGTTAACGATCTAAGGAACA 57195 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTAT-CGTCT 114426 | |||||||||| ||| || || | ||| | ||||| Sbjct 57196 ATAACTGATATAATGATCCTTTTGCGGTTTCCGTCT 57231 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/96 (83%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| ||||||||||||| || | |||||||||||| Sbjct 57136 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAATTGTTAACGATCTAAGGAACA 57195 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTAT-CGTCT 115623 | |||||||||| ||| || || | ||| | ||||| Sbjct 57196 ATAACTGATATAATGATCCTTTTGCGGTTTCCGTCT 57231 >seq4896 Length=24350 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 6952 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 7011 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 7012 ATAACTGATATAATGAGCCTTTTGCGGTTTC 7042 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 6952 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 7011 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 7012 ATAACTGATATAATGAGCCTTTTGCGGTTTC 7042 >seq1 Length=22559587 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 || ||| || | ||| || |||||||| || || || ||||||||| |||||||| || Sbjct 1136941 GATACCACCGCGCAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 1137000 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || ||| |||| |||| ||||||||||| || ||||| ||||||||||| Sbjct 1137001 GGACAGGGTTCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATC 1137057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397020395761360