Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3325 161 2e-34 seq1 134 3e-26 seq2 131 4e-25 seq4812 122 2e-22 >seq3325 Length=21082 Score = 161 bits (178), Expect = 2e-34 Identities = 175/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||||||||| | || || | || | || || || ||||| || ||||||| Sbjct 20526 TCCACCGCGGAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 20467 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||||||||| || | |||||| || |||||||| |||||||| ||| ||||| Sbjct 20466 CAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTGA---TCTGG 20410 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || || || || ||||||||||| || || |||||||| |||| || | || Sbjct 20409 GGGGATGCCCTCCTTGTCCTGGATTTTAGCCTTTACGTTTTCAATAGTGTCCGAAGGCTC 20350 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| || ||||| ||||| ||||||| |||||||||||| |||||||| Sbjct 20349 TACTTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 20299 Score = 132 bits (146), Expect = 1e-25 Identities = 155/207 (75%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || ||||||||||| || | |||||| || |||||| Sbjct 19577 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAG 19518 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| ||| |||||| || || || |||||||||||||| || ||||| Sbjct 19517 ATAAGACGCTGCTGA---TCTGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTCACA 19461 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || | || || ||||| || |||| ||||| Sbjct 19460 TTCTCAATCGTATCGGAGGGCTCCACCTCCAAAGTAATGGTCTTTCCAGTCAAGGTCTTC 19401 Query 288460 ACGAATATCTGCATTATG--TTATTCT 288484 || || ||||||||| || ||||||| Sbjct 19400 ACAAAGATCTGCATTTTGGATTATTCT 19374 Score = 131 bits (144), Expect = 4e-25 Identities = 173/238 (73%), Gaps = 13/238 (5%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||||| || | ||| || | |||| ||| || || ||||| || || || | Sbjct 21068 TCCACCGCGTAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGA 21009 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||||| || || || | || ||||| ||||| || |||||||| ||| ||||| Sbjct 21008 CAAAGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGA---TCTGG 20952 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC-----GCTC 288417 | ||||| || || |||||||||||||| || |||||||| |||| || |||| Sbjct 20951 GGGGATTCCCTCCTTGTCCTGGATTTTCGCCTTTACGTTTTCAATAGTGTCCGAAGGCTC 20892 Query 288418 --GATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || || ||||| ||||| ||||||| |||||| ||||| |||||||| Sbjct 20891 TTGGCTCCACCTCAAGAGTGATTGTCTTTCCGGTCAAAGTCTTTACGAAAATCTGCAT 20834 Score = 120 bits (132), Expect = 7e-22 Identities = 145/196 (74%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || |||| || ||||||||||| || | |||||| || ||||| Sbjct 20718 TTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAA 20659 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| ||||| || |||| ||||| || || || |||||||| || || ||||| Sbjct 20658 GATCAATCGCTGCTG---ATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC 20602 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | || | || ||||| | ||||| ||||| || || || ||||| Sbjct 20601 ATTTTCAATGGTGTCTGATGGCTCAACTTCCAAGGTGATGGTCTTGCCAGTAAGTGTCTT 20542 Query 288459 GACGAATATCTGCATT 288474 ||| || ||||||||| Sbjct 20541 GACAAAGATCTGCATT 20526 >seq1 Length=22559587 Score = 134 bits (148), Expect = 3e-26 Identities = 147/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || |||||||| | ||| ||||| || ||||| | || || || |||||| Sbjct 20155511 TCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAG 20155452 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| ||| ||||| ||||||||||| ||||| || || ||||| || Sbjct 20155451 ATCAGACGCTGCTGA---TCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACA 20155395 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| |||| ||| | ||| || || || ||||| ||||| || || || ||||| Sbjct 20155394 TTTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTC 20155335 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 20155334 ACGAAGATCTGCAT 20155321 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || || || | || || || ||||| || ||||||| Sbjct 1136945 CCACCGCGCAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1137004 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || ||||| || | || || || ||||||||||||||||| || |||| Sbjct 1137005 AGGGTTCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTG---ATCTGGG 1137061 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| || || |||||||| || || ||||| || || || | || | || Sbjct 1137062 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCC 1137121 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| ||||| || || || ||||| || ||||| Sbjct 1137122 ACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 1137171 >seq2 Length=2985096 Score = 131 bits (144), Expect = 4e-25 Identities = 146/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||||| | ||||||||||| || || || ||||| |||||| Sbjct 124157 TCCTTCTGGATATTGTAGTCGGACAAAGTGCGTCCGTCCTCCAACTGCTTTCCGGCGAAG 124098 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| || |||||| || || || || |||||||| || || |||||| Sbjct 124097 ATCAAACGCTGCTG---GTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACG 124041 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || | ||||| ||||| || ||||| ||||| Sbjct 124040 TTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTC 123981 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 123980 ACGAAGATCTGCAT 123967 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| || | || | ||| || || ||||| || ||||||| Sbjct 123965 CCTCCACGGAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 123906 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||||| || || || || ||||| ||||||||||||||||| || |||||| Sbjct 123905 AAAGTGCGTCCATCCTCCAACTGCTTTCCGGCGAAGATCAGACGCTGCTG---GTCTGGG 123849 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || || || || || || || | |||| | || Sbjct 123848 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCGATGGTATCGGAAGGCTCA 123789 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| || ||||| || || ||||| || ||||| Sbjct 123788 ACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATTTGCAT 123739 >seq4812 Length=908733 Score = 122 bits (134), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||||||||| || | ||| || || |||||| Sbjct 619867 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCCTCCAGTTGCTTGCCGGCGAAG 619926 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| || |||||| ||||| || || || ||||| || || || ||| Sbjct 619927 ATGAGACGCTGCTG---GTCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTGACG 619983 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | ||| | || ||||| || || || ||||| ||||||| |||||| Sbjct 619984 TTTTCAATGGTATCAGAAGGCTCGACTTCCAGAGTAATGGTCTTTCCGGTCAAAGTCTTC 620043 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 620044 ACGAAGATTTGCAT 620057 Score = 107 bits (118), Expect = 5e-18 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||||| || | ||||| | || | || || || ||||| || ||||||| Sbjct 620286 TCCACCGCGCAGACGGAGTACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 620345 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||||||||| || | |||||| || |||||||| |||||||| || |||||| Sbjct 620346 CAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTG---ATCTGG 620402 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || || || || || ||||| || || || |||||||| || | || | || Sbjct 620403 GGGAATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCCGAAGGCTC 620462 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || ||||| ||||| || || ||||| || Sbjct 620463 CACCTCCAGGGTGATGGTCTTGCCAGTAAGAGTTTT 620498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179523207685040