Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1 205 9e-48 >seq1 Length=22559587 Score = 205 bits (226), Expect = 9e-48 Identities = 868/1363 (64%), Gaps = 35/1363 (3%) Strand=Plus/Minus Query 93928 CCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTC 93987 || ||| |||| || || ||||| |||| | | ||||||||| ||| || ||||| Sbjct 20043209 CCGCAGCTGTCGTCTTGCTTCCTCTTGACCATGACGGCCGACTCTATCGAGGGCATTTTT 20043150 Query 93988 GACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTC 94047 | | | | | ||||| ||||| |||| || || || || || | | ||| Sbjct 20043149 AAGTCCGTGGAACAGTGTGCCTTGATCTCGAAATCGGCCGGCGGCATTGGACTTAACGTC 20043090 Query 94048 CACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTC 94107 || | | || || | ||| ||| || |||| || |||||||| ||||| ||| | Sbjct 20043089 CATTGCATCCGGGCAAAGGGCACCTCGATTTGCGGAACGAATGGCACATCCAATGGCTTG 20043030 Query 94108 GTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGG 94167 || || ||| | ||||||||||||| | |||||| || ||||| || || ||||| | | Sbjct 20043029 GTTCCCATGTTGAGGGTCTTCAACAATGTGGCGCGTTATGTGGATCAAGGAGGTGGCAAG 20042970 Query 94168 AGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATC 94227 | ||| | || || | || || |||||||||||| |||| || | ||| | Sbjct 20042969 CGTCCCGGTGCCTTTGCCATTTACCTGGAGCCCTGGCACTCGGATGTCTTTGAGTTCCTG 20042910 Query 94228 GACCTGCGAAAGAACCACGGCAACGATCTGGAGA---GGGCCAGAGACCTCTTCTACGCT 94284 || || || ||| |||||| || ||| | ||||| | || || || ||||| Sbjct 20042909 GAACTTAAGAAAAACACCGGCAAGGA---GGAAAATCGGGCCCGCGATCTGTTTTACGCC 20042853 Query 94285 CTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTT 94344 || ||| | || || || |||||||| ||||||||| || | ||| || | Sbjct 20042852 CTGTGGATACCCGATCTCTTTATGAAGCGCGTCGAGGCCAATGGAGATTGGTCGCTAATG 20042793 Query 94345 TGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTAT 94404 || || || |||| || || || ||| || || || || ||| | |||||| Sbjct 20042792 TGCCCACATAAATGCCCTGGGCTTCACGATGTGTGGGGCGATGAATTCGAAAAGTTGTAT 20042733 Query 94405 GCTCGTTACGAATCGCAGGGCAAGGC---CAGGAAGGTTATGGATGCTAGGAAGCTGTGG 94461 | || || |||| || ||| | |||| | ||| |||||| Sbjct 20042732 GAGAAATATGAGCAAGAGGGTCGTGCCAACAGAACTGTTA---AGGCTCAATCCCTGTGG 20042676 Query 94462 GATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCT 94521 | || | || | |||||| || || || | |||||||| ||||| ||||| | Sbjct 20042675 TTTGCCATTATTGAAGCACAGGTCGAAACTGGAAACCCCTACATGTTGTTTAAGGATGCC 20042616 Query 94522 GTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACC 94581 |||| ||| |||||||||| | |||| |||||| | ||| ||||||| Sbjct 20042615 TGCAACAGGAAGAGCAACCAGCAGAATGTCGGCACCATCAAGTGTAGCAATTTGTGCACA 20042556 Query 94582 GAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAAC 94641 || || || |||||| | ||||||| |||||||| || || ||| ||| |||||| | Sbjct 20042555 GAAATCGTAGAGTATTCCGCTCCGGATGAGATTGCAGTTTGCAACTTGGCATCCATCGCC 20042496 Query 94642 CTGTCCACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTT 94701 || || || || | || | | | | | |||| | || | ||| Sbjct 20042495 CTCAACATGTTTGT---CACTCCCGAGAAG---------ACATACGATTTCAAGAAACTT 20042448 Query 94702 -GTGAACTTCGCGGGAAGGATGGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTA 94760 ||| || | || || | | ||| || |||| | ||||||| | |||||||| Sbjct 20042447 AAGGAAGTTACCAAGACGG-TTACCAAGAATCTTAACAAGATAATCGATATTAACTTCTA 20042389 Query 94761 CCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCA 94820 |||| | || ||||| |||| || || ||| |||||| ||| | |||||||| ||||| Sbjct 20042388 CCCCCTGCCAGAGGCCAAGAAATCCAATTTGAGGCATCGTCCCGTGGGCATCGGTGTCCA 20042329 Query 94821 GGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGG 94880 ||| ||||| ||||| || | | ||||| | ||||| || || || || | Sbjct 20042328 GGGATTCGCTGACGCCTTGATTCTCATGCGGTTCCCCTATGAAAGTGATGAAGCCGGCCT 20042269 Query 94881 TTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCAT-GAAACAATCCGTCCACT 94939 |||||| | | || ||||||| || || ||||| || | ||| | | || ||| Sbjct 20042268 CTTGAATCAGCAGATTTTCGAAACTATCTACTACGGCGCTTTGGAAGCCAGTTGTGAACT 20042209 Query 94940 TGGCCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCA 94999 | |||||||| | || ||| | ||| | | ||| ||| || | || | Sbjct 20042208 GGCCCAGATCGAA----GGTCCATATGAAACCTATGAGGGAAGCCCCGTGAGCAAAGGAA 20042153 Query 95000 TTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGG--GAAGCTCT 95057 || | |||| |||| | |||| |||| || || | |||||| ||| || Sbjct 20042152 TTCTGCAGTACGACATGTGGGACAAAGAGCCAACGAACCTTTGGGACTGGCAGAAACTGA 20042093 Query 95058 ACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCAC 95117 | | | | | | || |||||||| ||| | ||| | || || || |||||||| Sbjct 20042092 AGGAGTCCA--TCAAGAAGCACGGTGTCCGGAACTCCCTGTTGGTTGCTCCTATGCCCAC 20042035 Query 95118 GGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGT 95177 || || || || || || | || |||||||| || ||||| || | ||| | || | Sbjct 20042034 TGCTTCTACTGCTCAAATTATGGGTAACAACGAATCATTCGAGCCTTACACAACGAATAT 20041975 Query 95178 GTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGA 95237 || | |||||| || || | || ||||||| || | ||| | || | || |||| Sbjct 20041974 TTATACCAGGCGAGTTCTGTCTGGAGAATTCCAAGTGGTTAACCATCATTTGTTAAGGGA 20041915 Query 95238 CCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAA 95280 ||| ||| |||| |||||| ||| | | ||||||||| Sbjct 20041914 CCTAACGGAGCTGGACTTGTGGGACGACGATATGAAGAACCAA 20041872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494669522532800