Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 244 1e-59 seq5016 143 3e-29 seq4812 122 9e-23 seq3325 104 2e-17 seq2 91.5 1e-13 >seq1 Length=22559587 Score = 244 bits (270), Expect = 1e-59 Identities = 979/1520 (64%), Gaps = 40/1520 (3%) Strand=Plus/Plus Query 152709 GCCGCAGGCTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCGCAGCG--CCACGAGT 152766 || || ||||||||||||| |||||||| || ||||| || || ||| ||| || | Sbjct 20041612 GCAGCTGGCTTTGTGCGCAGGTAATACATTCCAGTTTTTAGACC--AGCTTTCCAGGAAT 20041669 Query 152767 AATTGTGAATCGAAGTCATCACAGCGTACGTCGGTTGCGCCACGAACAGATTAAACGATT 152826 || ||| || ||||| | |||| | || | ||||| | || ||||| | Sbjct 20041670 AAAAGTGTATGGAAGTAAGTTTTCCGTAGTTTGGCTCTGCCACATGAATGTTGAACGACT 20041729 Query 152827 GGCTCTGATCTATGAAAGCGTTACGGTCGGCCGCCATCTCAATCATGCGTTTTGCCTTCA 152886 | ||||||||||| || || || || || ||||||| ||| || ||| | | Sbjct 20041730 GACTCTGATCTATAAACGCACCTCGATCTGCGGCCATCTTAATAGTGGACTTTACTGAGA 20041789 Query 152887 TCTCCCAGGCGGTTTTGTACAAATTTTTAACGCTATCCGGTATACCTTCAATGTTCTGAA 152946 | ||||| | |||||||||| || ||| | | || || | ||||| || || | Sbjct 20041790 TTTCCCACACAGTTTTGTACAGATCGCGAACCTTCTGGGGGATGGCCTCAATATTTTGGA 20041849 Query 152947 TAGAGCCCTTGTGTGCAAAAATAGCGTTTCGTATTTCGGGCGTGT-ACACGTTCAGTTTA 153005 | |||||| || | || || ||| || ||| ||| ||| || ||| | Sbjct 20041850 TTGAGCCCCTGCTGGAAATGATTTGGTTCTTCATATCGT-CGTCCCACAAGTCCAGCTCC 20041908 Query 153006 ATGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTC 153065 | ||||| | ||| | ||||| |||||||| || || || | || ||||| || Sbjct 20041909 GTTAGGTCCCTTAACAAATGATGGTTAACCACTTGGAATTCTCCAGACAGAACTCGCCTG 20041968 Query 153066 AAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTG 153125 ||| | ||| | ||| |||| || || |||||||| || || | |||||||| || Sbjct 20041969 GTATAAATATTCGTTGTGTAAGGCTCGAATGATTCGTTGTTACCCATAATTTGAGCAGTA 20042028 Query 153126 GTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCG-CTCGAATGTC 153184 | || || ||||| || ||||||| || ||||| | |||||| || || | | Sbjct 20042029 GAAGCAGTGGGCATAGGAGCAACCAACAGGGAGTTCCGGACACCGTGCTTCTTGATGGAC 20042088 Query 153185 GTCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTG 153244 ||||||| |||||| ||||| || || || || ||||||||||||||| Sbjct 20042089 -TCCTTCAGTTTCTGCCAGTCCCAAAGGTTCGTTGGCTCTTTGTCCCACATGTCGTACTG 20042147 Query 153245 TAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGC 153304 | | |||| || |||| || || || | || || || ||| ||||| Sbjct 20042148 CAGAATTCCTTTGCTCACGGGGCTTCCCTCATAGGTTTCATATGGACCTTCGATCTGGGC 20042207 Query 153305 CAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAG 153364 |||||| || || || || | ||||| ||||| || |||||| || || | ||| | Sbjct 20042208 CAGTTCACAACTGGCTTCCAAAGCGCCGTAGTAGATAGTTTCGAAAATCTGCTGATTCAA 20042267 Query 153365 AACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACC 153424 | | | ||||| || || || || || | |||| || | |||||||| || | || Sbjct 20042268 GAGGCCGGCTTCATCACTTTCATAGGGGAACCGCATGAGAATCAAGGCGTCAGCGAATCC 20042327 Query 153425 CTGGATACCGACGCCGATGGGTCGATGCTTC---TCG--TTGCTGCGCCTCGCGCTCGCT 153479 ||||| ||||| ||| | ||| |||||| || | | || || ||||| || Sbjct 20042328 CTGGACACCGATGCCCACGGGACGATGCCTCAAATTGGATTTCTTGGCCTCTGGC----- 20042382 Query 153480 ATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATC 153539 | ||| ||| || |||||| || ||||| || || ||| || || | Sbjct 20042383 AGGGGGTAGAAGTTAATATCGATTATCTTGTTAAGATTCTTGGTAACCGTCTTGGTAACT 20042442 Query 153540 GCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCA 153599 |||||||||||| |||||| || ||| | ||| | | | || | || | ||| Sbjct 20042443 TCCTTAAGTTTCTTGAAATCGTATGTCTTCTCG--GGAGTG-ACAAACATGTTGAGGGCG 20042499 Query 153600 ATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCG 153659 || || |||| || || || || |||| || | || |||| ||||| || | | Sbjct 20042500 ATGGATGCCAAGTTGCAAACTGCAATCTCATCCGGAGCGGAATACTCTACGATTTCTGTG 20042559 Query 153660 CAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCG 153719 || | ||||| || || ||| ||| | ||| ||||| ||||| || | ||||| || Sbjct 20042560 CACAAATTGCTACACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCCTGTTGCAGGCA 20042619 Query 153720 TCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTA 153776 || || || | |||||| || || || ||||| || | ||| | || ||||| Sbjct 20042620 TCCTTAAACAACATGTAGGGGTTTCCAGTTTCGACCTGTGCTTCAATAATGGCAAACC-- 20042677 Query 153777 TGCAGGTCCTGCGCTCGCACCCG--CTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGT 153834 |||| || || | | | | ||| | | || ||||| ||| ||| ||| | Sbjct 20042678 -ACAGGGATTGAGC-CTTAACAGTTCTGTTGGCA-CGACCCTCTTGCTCATATTTCTCAT 20042734 Query 153835 ACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACA 153894 ||| || || || ||||| | ||| || || || || | ||| || |||| Sbjct 20042735 ACAACTTTTCGAATTCATCGCCCCACACATCGTGAAGCCCAGGGCATTTATGTGGGCACA 20042794 Query 153895 TCAGCGACCACATAT-CGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGC 153953 | |||||||| || | | | ||| | |||||| ||| || ||||| || | ||| || Sbjct 20042795 TTAGCGACCA-ATCTCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCACAGG 20042853 Query 153954 GCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGC 154013 ||||| | || ||||| ||| |||||| ||| |||| || || | || Sbjct 20042854 GCGTAAAACAGATCGCGGGCCCGATTTTCCTCCTTGCCGGTGTTTTTCTTAAGTTCCAGG 20042913 Query 154014 ACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTT- 154072 | | ||| || | ||||||||| || | ||| | ||| | |||||| |||||| Sbjct 20042914 AACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGGACGCTTG 20042973 Query 154073 --TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGG 154130 || || ||||| || | ||| ||| |||||||||||| | || |||||| ||| | Sbjct 20042974 CCACCTCCTTGATCCACATAACGCGCCACATTGTTGAAGACCCTCAACATGGGAACCAAG 20043033 Query 154131 CCGCTTGCGGTGCCGTTGGT--CGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCA 154188 || | | ||||| || || || | ||| | |||| || || | ||| | Sbjct 20043034 CCATTGGATGTGCCATTCGTTCCGCA--AATCGAGGTGCCCTTTGCCCGGATGCAATGGA 20043091 Query 154189 CGTTAACGCCAATGCCGCCG 154208 |||||| |||||||||||| Sbjct 20043092 CGTTAAGTCCAATGCCGCCG 20043111 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || |||||| || || || |||| Sbjct 1136978 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCGTCCTCCAGCTGCTTGCCGGCG 1137037 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || || || || || || ||||| ||| || || | Sbjct 1137038 AAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACA 1137097 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||||||||| | || | || || || || || ||||| Sbjct 1137098 TTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTC 1137157 Query 138601 ACAAAAATCTGCATGG 138616 || || || ||||||| Sbjct 1137158 ACGAAGATTTGCATGG 1137173 >seq5016 Length=829163 Score = 143 bits (158), Expect = 3e-29 Identities = 246/351 (70%), Gaps = 11/351 (3%) Strand=Plus/Minus Query 57110 CAATGCCGATGATGCCGCAGCCGAGACGGCCGCCCGAGTTGCCGGTGGTCTTGCTCAGCG 57169 ||||||| |||| ||||||||| | ||| | || | ||| || |||| |||||||||| Sbjct 682143 CAATGCCAATGACGCCGCAGCCAATGCGGGCACCAGCGTTTCCCGTGGACTTGCTCAGCT 682084 Query 57170 GATGTTCGGTGAGGCCGAGATCGTCGCGCTTCG-CGTGAACCACCAGACTGCGGCCGACG 57228 || | |||||||||| ||| || ||| |||| ||||| | |||| || | | Sbjct 682083 CGTGGCCACCCTGGCCGAGATCATCG-GCATCGGCGTGGACCACAACGGTGCGCCCTATG 682025 Query 57229 ACGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCG 57288 | ||| | ||||||| | ||| ||| |||| | ||| || | ||| || | Sbjct 682024 ATGCTGTCGGCGCCGAACAACGTGATCTTCGAGTCGGTAATGTTGACCTTCGTG-GGACA 681966 Query 57289 TTGGACACTTTGGCCTCGACGTTGCCCAAGTCGCCGACGTGCCG---CACGGCCGCGTTG 57345 | | | || ||||| | |||||||| || || | ||| || | || | ||| Sbjct 681965 GTCGCCGCTC--GCCTCAATGTTGCCCAGATCTCCCAGGTGACGATTCTCGTCGGCG--- 681911 Query 57346 GGAGCGCCGTGTTCGCTGCCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTG 57405 ||||| ||||| || |||| |||||| |||||| || | |||| ||||||||||| Sbjct 681910 GGAGCTCCGTGCTCCTTGCCATAGGGGTTGAAGTGCGGTCCGGACGACATGCAGCCGTTG 681851 Query 57406 CTGGTGTCGCCGAACTCGTGAACGTGAAATCCGTGCAGGCCCCTCGGCAGA 57456 || |||| || |||||||||||||| |||||||| |||||| | | |||| Sbjct 681850 GTGTTGTCCCCAAACTCGTGAACGTGGAATCCGTGAAGGCCCTTGGCCAGA 681800 >seq4812 Length=908733 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | ||| ||||| | | | |||||||| ||||||||||| ||| | Sbjct 620059 CCACCACGCAGACGGAGAACCAAATGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGAC 620118 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| || || || |||| |||| |||||||| || || || || Sbjct 620119 AAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 620178 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || ||| | | ||| | |||||| | | ||||||| Sbjct 620179 ATACCCTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCTGAAGGCTCCACC 620238 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| |||||||| || || |||||||| Sbjct 620239 TCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTGACGAAGATCTGCAT 620285 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | | |||||||| || |||||||||||| | Sbjct 620287 CCACCGCGCAGACGGAGTACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 620346 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| |||||||| |||| |||| |||||||| || || || || Sbjct 620347 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGA 620406 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | ||| | |||||| | | ||||||| Sbjct 620407 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCCGAAGGCTCCACC 620466 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 || | || | || || ||||| |||||||| Sbjct 620467 TCCAGGGTGATGGTCTTGCCAGTAAGAGTTTT 620498 >seq3325 Length=21082 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | ||| || || | | | |||||||| ||||||||||| ||| | Sbjct 20297 CCACCACGCAGACGGAGAACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGAC 20238 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || |||| |||| |||||||| || || || || Sbjct 20237 AGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 20178 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | ||| | |||||| | | |||||| Sbjct 20177 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTTTCAATGGTGTCCGAAGGTTCCACC 20118 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| |||||||| ||||| |||||||| Sbjct 20117 TCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTGACAAAGATCTGCAT 20071 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | | |||||||| || |||||||||||| | Sbjct 19613 CCACCGCGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 19554 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| |||||||| |||| |||| |||||||| || || || || Sbjct 19553 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGG 19494 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || || || |||||| || | | || | || |||| | ||||||| Sbjct 19493 ATGCCCTCCTTATCCTGGATTTTGGCCTTCACATTCTCAATCGTATCGGAGGGCTCCACC 19434 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||| || || ||||| |||||||| Sbjct 19433 TCCAAAGTAATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 19387 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | | |||||||| || |||||||||||| | Sbjct 20525 CCACCGCGGAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 20466 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| |||||||| |||| |||| |||||||| || || || || Sbjct 20465 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGG 20406 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| |||||| |||| | ||| | ||||| | | ||| || Sbjct 20405 ATGCCCTCCTTGTCCTGGATTTTAGCCTTTACGTTTTCAATAGTGTCCGAAGGCTCTACT 20346 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || |||| ||| || || ||||||||||| Sbjct 20345 TCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 20299 >seq2 Length=2985096 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | | |||||||| || |||||||||||| | Sbjct 123965 CCTCCACGGAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 123906 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| | || || |||| |||| |||||||| ||||| || || Sbjct 123905 AAAGTGCGTCCATCCTCCAACTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGA 123846 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | ||| |||| | ||| ||| Sbjct 123845 ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCGATGGTATCGGAAGGCTCAACC 123786 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || |||||||| ||||| || ||||| |||||| Sbjct 123785 TCCAAAGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATTTGCATG 123738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496208555529600