Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 203 3e-47 seq2 91.5 1e-13 >seq1 Length=22559587 Score = 203 bits (224), Expect = 3e-47 Identities = 842/1319 (64%), Gaps = 37/1319 (3%) Strand=Plus/Minus Query 123371 GGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCG 123430 ||| ||||| ||||||||| |||| ||||| | ||| |||||||| | |||||| Sbjct 20042886 GGAGGAAAATCGGGCCCGCGATCTGTTTTACGCCCTGTGGATACCCGATCTCTTTATGAA 20042827 Query 123431 ACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGG-CTTGA 123489 ||||| | | | | || | |||||||| ||||| || || || || || ||| | Sbjct 20042826 GCGCGTCGAGGCCAATGGAGATTGGTCGCTAATGTGCCCACATAAATGCCCTGGGCTTCA 20042767 Query 123490 GCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGG----- 123544 ||| || | ||| || | || || ||||||| | | |||| |||| || || Sbjct 20042766 -CGATGTGTGGGGCGATGAATTCGAAAAGTTGTATGAGAAATATGAGCAAGAGGGTCGTG 20042708 Query 123545 CAAACAG----GTTAGTCAGGTTCCGGCAC-GTGATTTGTTCAAATTTATTATCGAAACA 123599 | ||||| |||| ||| || | | ||| |||| ||||| ||| || Sbjct 20042707 CCAACAGAACTGTTA---AGGCTCAATCCCTGTGGTTTGCC-------ATTATTGAAGCA 20042658 Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 || |||||||| |||| || |||||| | | || || |||||||||||||| | ||| Sbjct 20042657 CAGGTCGAAACTGGAAACCCCTACATGTTGTTTAAGGATGCCTGCAACAGGAAGAGCAAC 20042598 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719 ||| || | || || || || ||||| ||| | ||| | ||||| | || || | Sbjct 20042597 CAGCAGAATGTCGGCACCATCAAGTGTAGCAATTTGTGCACAGAAATCGTAGAGTATTCC 20042538 Query 123720 GATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAA 123779 | | | ||| | | || || || || ||||| || || | | || | ||| | Sbjct 20042537 GCTCCGGATGAGATTGCAGTTTGCAACTTGGCATCCATCGCCCTCAACATGTTTGTC-AC 20042479 Query 123780 AACGGCG----CTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAA 123835 | | | | | ||||| | | || || | || || || || ||||| Sbjct 20042478 TCCCGAGAAGACATACGATTTCAAGAAACTTAAGGAAGTTACCAAGACGGTTACCAAGAA 20042419 Query 123836 TTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTT 123895 | | ||||| || |||||| |||| || || || || || || || ||||| Sbjct 20042418 TCTTAACAAGATAATCGATATTAACTTCTACCCCCTGCCAGAGGCCAAGAAATCCAATTT 20042359 Query 123896 GAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCG 123955 || || | || || || | || | || || || || ||||| || | | |||| Sbjct 20042358 GAGGCATCGTCCCGTGGGCATCGGTGTCCAGGGATTCGCTGACGCCTTGATTCTCATGCG 20042299 Query 123956 CATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTA 124015 | || || ||||| || ||||| | | ||| ||| || |||||| || || Sbjct 20042298 GTTCCCCTATGAAAGTGATGAAGCCGGCCTCTTGAATCAGCAGATTTTCGAAACTATCTA 20042239 Query 124016 TTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTA 124075 |||||||||||||| || || || ||||| || | || | || | || |||| || Sbjct 20042238 CTACGGCGCTTTGGAAGCCAGTTGTGAACTGGCCCAGATCGAAGGTCCATATGAAACCTA 20042179 Query 124076 CGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGAC 124135 | ||| ||||| | |||| ||| ||| ||||||||||||||||| | || || Sbjct 20042178 TGAGGGAAGCCCCGTGAGCAAAGGAATTCTGCAGTACGACATGTGGGACAAAGAGCCAAC 20042119 Query 124136 AAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTC 124195 || | ||||||||| | || | ||| || ||||||| | || ||||| Sbjct 20042118 GAACCTTTGGGACTGGCAGAAACTGAAGGAGTCCATCAAGAAGCACGGTGTCCGGAACTC 20042059 Query 124196 GCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATC 124255 |||||||| || ||||| || || | |||||||||||| | || ||||||||||| Sbjct 20042058 CCTGTTGGTTGCTCCTATGCCCACTGCTTCTACTGCTCAAATTATGGGTAACAACGAATC 20041999 Query 124256 CTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGT 124315 |||||||| | ||| | ||| | || | ||||| | | || || || ||||| Sbjct 20041998 ATTCGAGCCTTACACAACGAATATTTATACCAGGCGAGTTCTGTCTGGAGAATTCCAAGT 20041939 Query 124316 GATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATGCG 124375 | | || ||||||||| | ||| | || | | | |||| || || | ||| Sbjct 20041938 GGTTAACCATCATTTGTTAAGGGACCTAACGGAGCTGGACTTGTGGGACGACGATATGAA 20041879 Query 124376 CAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAACACGT 124435 ||| |||| ||| | | | ||| | || || | | || || | | || Sbjct 20041878 GAACCAAATCATTTCCAGCAGGGGCTCAATCCAAAATATTGAGGCCATCCCCCAGAAGGT 20041819 Query 124436 CAAGCAACTGTACAAAACCGTGTGGGAAAT----GAAAAATAAACGATTAATTGAAATGG 124491 | ||||||||||| ||||||||||| | ||| | || |||| | |||| Sbjct 20041818 TCGCGATCTGTACAAAACTGTGTGGGAAATCTCAGTAAAGTCCACTATTA----AGATGG 20041763 Query 124492 CCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAAC 124551 ||| || ||||| |||| | ||||| ||||| || || ||| | ||| || || | Sbjct 20041762 CCGCAGATCGAGGTGCGTTTATAGATCAGAGTCAGTCGTTCAACATTCATGTGGCAGAGC 20041703 Query 124552 CCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGC-GGACTCAAAACG 124610 | | ||||| | || ||||||| | | | |||| ||| || || ||||| Sbjct 20041702 CAAACTACGGAAAACTTACTTCCATACACTTTTATTCCTGGA-AAGCTGGTCTAAAAACT 20041644 Query 124611 GGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAA 124669 || ||||||||| | | || || || || || | || ||||| || || || ||||| Sbjct 20041643 GGAATGTATTACCTGCGCACAAAGCCAGCTGCAAACGCTATTCAGTTCACTGTAGACAA 20041585 >seq2 Length=2985096 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | ||| | || || || || ||||| ||||| || || ||| Sbjct 123968 ATACCTCCACGGAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 123909 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| ||||| || ||||| ||| | |||| || |||||||| || Sbjct 123908 GACAAAGTGCGTCCATCCTCCAACTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGG 123849 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || || || || || || | || | ||| ||||||| ||| Sbjct 123848 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCGATGGTATCGGAAGGCTCA 123789 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || ||||| || || ||||| || ||||||||||| Sbjct 123788 ACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATTTGCAT 123739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451954157652800