Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30]
8,680 sequences; 232,923,092 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq1 203 3e-47
seq2 91.5 1e-13
>seq1
Length=22559587
Score = 203 bits (224), Expect = 3e-47
Identities = 842/1319 (64%), Gaps = 37/1319 (3%)
Strand=Plus/Minus
Query 123371 GGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCG 123430
||| ||||| ||||||||| |||| ||||| | ||| |||||||| | ||||||
Sbjct 20042886 GGAGGAAAATCGGGCCCGCGATCTGTTTTACGCCCTGTGGATACCCGATCTCTTTATGAA 20042827
Query 123431 ACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGG-CTTGA 123489
||||| | | | | || | |||||||| ||||| || || || || || ||| |
Sbjct 20042826 GCGCGTCGAGGCCAATGGAGATTGGTCGCTAATGTGCCCACATAAATGCCCTGGGCTTCA 20042767
Query 123490 GCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGG----- 123544
||| || | ||| || | || || ||||||| | | |||| |||| || ||
Sbjct 20042766 -CGATGTGTGGGGCGATGAATTCGAAAAGTTGTATGAGAAATATGAGCAAGAGGGTCGTG 20042708
Query 123545 CAAACAG----GTTAGTCAGGTTCCGGCAC-GTGATTTGTTCAAATTTATTATCGAAACA 123599
| ||||| |||| ||| || | | ||| |||| ||||| ||| ||
Sbjct 20042707 CCAACAGAACTGTTA---AGGCTCAATCCCTGTGGTTTGCC-------ATTATTGAAGCA 20042658
Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659
|| |||||||| |||| || |||||| | | || || |||||||||||||| | |||
Sbjct 20042657 CAGGTCGAAACTGGAAACCCCTACATGTTGTTTAAGGATGCCTGCAACAGGAAGAGCAAC 20042598
Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719
||| || | || || || || ||||| ||| | ||| | ||||| | || || |
Sbjct 20042597 CAGCAGAATGTCGGCACCATCAAGTGTAGCAATTTGTGCACAGAAATCGTAGAGTATTCC 20042538
Query 123720 GATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAA 123779
| | | ||| | | || || || || ||||| || || | | || | ||| |
Sbjct 20042537 GCTCCGGATGAGATTGCAGTTTGCAACTTGGCATCCATCGCCCTCAACATGTTTGTC-AC 20042479
Query 123780 AACGGCG----CTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAA 123835
| | | | | ||||| | | || || | || || || || |||||
Sbjct 20042478 TCCCGAGAAGACATACGATTTCAAGAAACTTAAGGAAGTTACCAAGACGGTTACCAAGAA 20042419
Query 123836 TTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTT 123895
| | ||||| || |||||| |||| || || || || || || || |||||
Sbjct 20042418 TCTTAACAAGATAATCGATATTAACTTCTACCCCCTGCCAGAGGCCAAGAAATCCAATTT 20042359
Query 123896 GAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCG 123955
|| || | || || || | || | || || || || ||||| || | | ||||
Sbjct 20042358 GAGGCATCGTCCCGTGGGCATCGGTGTCCAGGGATTCGCTGACGCCTTGATTCTCATGCG 20042299
Query 123956 CATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTA 124015
| || || ||||| || ||||| | | ||| ||| || |||||| || ||
Sbjct 20042298 GTTCCCCTATGAAAGTGATGAAGCCGGCCTCTTGAATCAGCAGATTTTCGAAACTATCTA 20042239
Query 124016 TTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTA 124075
|||||||||||||| || || || ||||| || | || | || | || |||| ||
Sbjct 20042238 CTACGGCGCTTTGGAAGCCAGTTGTGAACTGGCCCAGATCGAAGGTCCATATGAAACCTA 20042179
Query 124076 CGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGAC 124135
| ||| ||||| | |||| ||| ||| ||||||||||||||||| | || ||
Sbjct 20042178 TGAGGGAAGCCCCGTGAGCAAAGGAATTCTGCAGTACGACATGTGGGACAAAGAGCCAAC 20042119
Query 124136 AAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTC 124195
|| | ||||||||| | || | ||| || ||||||| | || |||||
Sbjct 20042118 GAACCTTTGGGACTGGCAGAAACTGAAGGAGTCCATCAAGAAGCACGGTGTCCGGAACTC 20042059
Query 124196 GCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATC 124255
|||||||| || ||||| || || | |||||||||||| | || |||||||||||
Sbjct 20042058 CCTGTTGGTTGCTCCTATGCCCACTGCTTCTACTGCTCAAATTATGGGTAACAACGAATC 20041999
Query 124256 CTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGT 124315
|||||||| | ||| | ||| | || | ||||| | | || || || |||||
Sbjct 20041998 ATTCGAGCCTTACACAACGAATATTTATACCAGGCGAGTTCTGTCTGGAGAATTCCAAGT 20041939
Query 124316 GATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATGCG 124375
| | || ||||||||| | ||| | || | | | |||| || || | |||
Sbjct 20041938 GGTTAACCATCATTTGTTAAGGGACCTAACGGAGCTGGACTTGTGGGACGACGATATGAA 20041879
Query 124376 CAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAACACGT 124435
||| |||| ||| | | | ||| | || || | | || || | | ||
Sbjct 20041878 GAACCAAATCATTTCCAGCAGGGGCTCAATCCAAAATATTGAGGCCATCCCCCAGAAGGT 20041819
Query 124436 CAAGCAACTGTACAAAACCGTGTGGGAAAT----GAAAAATAAACGATTAATTGAAATGG 124491
| ||||||||||| ||||||||||| | ||| | || |||| | ||||
Sbjct 20041818 TCGCGATCTGTACAAAACTGTGTGGGAAATCTCAGTAAAGTCCACTATTA----AGATGG 20041763
Query 124492 CCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAAC 124551
||| || ||||| |||| | ||||| ||||| || || ||| | ||| || || |
Sbjct 20041762 CCGCAGATCGAGGTGCGTTTATAGATCAGAGTCAGTCGTTCAACATTCATGTGGCAGAGC 20041703
Query 124552 CCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGC-GGACTCAAAACG 124610
| | ||||| | || ||||||| | | | |||| ||| || || |||||
Sbjct 20041702 CAAACTACGGAAAACTTACTTCCATACACTTTTATTCCTGGA-AAGCTGGTCTAAAAACT 20041644
Query 124611 GGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAA 124669
|| ||||||||| | | || || || || || | || ||||| || || || |||||
Sbjct 20041643 GGAATGTATTACCTGCGCACAAAGCCAGCTGCAAACGCTATTCAGTTCACTGTAGACAA 20041585
>seq2
Length=2985096
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||| ||||| | | ||| | || || || || ||||| ||||| || || |||
Sbjct 123968 ATACCTCCACGGAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 123909
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || ||| ||||| || ||||| ||| | |||| || |||||||| ||
Sbjct 123908 GACAAAGTGCGTCCATCCTCCAACTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGG 123849
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|||||||| || || || || || || || | || | ||| ||||||| |||
Sbjct 123848 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCGATGGTATCGGAAGGCTCA 123789
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || | ||| | || ||||| || || ||||| || |||||||||||
Sbjct 123788 ACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATTTGCAT 123739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451954157652800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |