Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4563 136 5e-27 >seq4563 Length=14502029 Score = 136 bits (150), Expect = 5e-27 Identities = 293/433 (68%), Gaps = 4/433 (1%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || ||| |||||| |||||||| ||||| || || || ||| ||||||| Sbjct 3739881 GTACTCGCCCACCTTCTTCTCAAAGAAGTTCGTCTTTCCGTCCAGCGAGATCATCTCCAT 3739822 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCA-ATCTGTTTGAGGAGAC 127349 || | ||| |||||||| | || | ||| ||| || | | | || || || | Sbjct 3739821 GAAGTTAAAGGGGTTCTTGGTATTGTAGATT-TTGCCAACGCTCAACTCCACCAGCAGTC 3739763 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 | |||| ||| | |||||||||| ||||| || ||||||| ||||||||||| Sbjct 3739762 GGTCCGCCACGAATTCAATGTACTGCGACATAAGATCGCAGTTCATGCCGATGAGGTTTA 3739703 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 || | || || | |||| ||| ||||||| |||| || || || | ||| || Sbjct 3739702 CGGGCAAGGCATCGGTTAAGAACTCCTGCTCAATGGCCACCGCATCGCGGATGATCTCGA 3739643 Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTAAAGT-CTTGAAGAGTTCCACAGCAAACTCT 127528 || | | | | || || ||| |||| || ||| | ||| ||||| || Sbjct 3739642 TGAT-GCGCTCGCGCCTGGGTCGCTGCACCAAGTGCTGGAACATCAGCACGGCAAAGTCG 3739584 Query 127529 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 127588 || | |||||||| |||||||| || || || |||||| ||| || ||||| ||| Sbjct 3739583 CAATGCAAGCCCTCGTCGCGGGAGATAAGCTCGTTGGAGAAGGTCAGTCCCGGCATCAGA 3739524 Query 127589 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 || |||||||||| ||||||||| | ||| ||| ||||||||| ||||| || Sbjct 3739523 CCGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAGATGCCCTCGACG 3739464 Query 127649 CACGCGAACGCAA 127661 ||||| |||| Sbjct 3739463 GCAGCGAAGGCAA 3739451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613440634468800