Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4563 196 8e-45 seq1 120 5e-22 >seq4563 Length=14502029 Score = 196 bits (216), Expect = 8e-45 Identities = 541/813 (67%), Gaps = 30/813 (4%) Strand=Plus/Minus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| |||||||| || ||||| ||||| || |||| || || |||||||| || Sbjct 3739872 CACCTTCTTCTCAAAGAAGTTCGTCTTTCCGTCCAGCGAGATCATCTCCATGAAGTTAAA 3739813 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 |||||||| | ||| || || | | || |||||| | ||| ||||| Sbjct 3739812 GGGGTTCTTGGTATTGTAGATTTTGCCAACGCTCAACTCCACCAGCAGTCGGTCCGCCAC 3739753 Query 159763 AAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821 ||||| ||||| || | |||| | || ||||| || || | || | ||||| | | Sbjct 3739752 GAATTCAATGTA-CTGCGACATAAGATCGCAGTTCATGCCGATGAGGTTTACGGGCAAGG 3739694 Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA-GACACGT 159880 | || | | ||||||| |||||| | ||||| ||| | |||| ||| || || Sbjct 3739693 CATCGGTTAAGAACTCCTGCTCAATGGCCACCGCATCGCGGATGATCT-CGATGATGCGC 3739635 Query 159881 TCGTACCCCGGCTTGCC-CAAAATGTGGTCCTTAAACAGGAGGCACG-CAAAGTCGCAGT 159938 ||| || || | || || | ||| || |||| || |||| |||||||||| | Sbjct 3739634 TCGCGCCTGGG-TCGCTGCACCAAGTG---CTGGAACATCAG-CACGGCAAAGTCGCAAT 3739580 Query 159939 GCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCAC 159998 ||| |||||||| || ||||| | ||||||||| | | | || |||||||| | || | Sbjct 3739579 GCAAGCCCTCGTCGCGGGAGATAAGCTCGTTGGAGAAGGTCAGTCCCGGCATCAGACCGC 3739520 Query 159999 GCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCG 160058 || || ||||| ||||||| ||||| ||||| || ||||| ||||| ||||| | Sbjct 3739519 GCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAGATGCCCTCGACGGCAG 3739460 Query 160059 CAAACGCCACGAGCCTCTCACCAAAAGAGGC---GTTGGTGTCATGGGTCCACCTTTTGG 160115 | || || | || | ||| || ||| ||| |||| | | |||| || Sbjct 3739459 CGAAGGCAATGATGCGCTCCCCGAAATTGGCCGATTTGGAG---GAGATCCAGGAAAGGG 3739403 Query 160116 CCCATTCAGCCTTCTTTGCGATGCA----CGGCATGCGCTCGACGGCGTTAAACAATCTG 160171 |||| || ||| ||||| | || |||||| ||||| |||||| |||| | Sbjct 3739402 CCCAGTCCGCC----TTGCGCTTCACAGCCGGCATTGTCTCGATGGCGTTGAACAGGTAG 3739347 Query 160172 TCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGC 160231 ||| ||| | | |||| ||| ||| | |||||| ||||||||| | |||| Sbjct 3739346 TCCCGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATTTCCGAGTGC 3739287 Query 160232 ACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCC-AGATACTGCACCTC 160290 || || || ||||| || || ||| ||||| | |||||| ||| ||||||||| Sbjct 3739286 ACGTTCTCCATGGCGATTTGGAAGCCATAGAAGCACCGAGCCTCCGTGAT-CTGCACCTC 3739228 Query 160291 CTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGC 160350 ||| |||| | | |||| || | || || | || |||| || |||||||| || Sbjct 3739227 CTGACTGAAGCGCTCCACCAGGTTCTCGTTCACGATGCCATCGGATGCGGCAAAGAAGGC 3739168 Query 160351 CAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCAC 160410 || |||||| |||||||| || | ||||| | || || | | ||||| |||| Sbjct 3739167 CAGCACGTGCGAGATGAAGTGACGTTCGTCGTCCTTCAGGC---GGTGCCAGTCGGTCAG 3739111 Query 160411 GTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 ||| | || || ||| ||||| ||| || |||| Sbjct 3739110 GTCCTTGGACAGATCCACCTCCTCCACGGTCCA 3739078 >seq1 Length=22559587 Score = 120 bits (132), Expect = 5e-22 Identities = 324/493 (66%), Gaps = 2/493 (0%) Strand=Plus/Plus Query 203838 TCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGC 203897 ||||||| || ||||||||||| ||||| | || ||| | | | ||| || ||||| | Sbjct 20041583 TCTTGTCTACAGTGAACTGAATAGCGTTTGCAGCTGGCTTTGTGCGCAGGTAATACATTC 20041642 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 | || ||||| || | ||| || | ||| ||||||| ||||| | ||| | Sbjct 20041643 CAGTTTTTAGACCAGCTTTCCAGGAATAAAAGTGTATGGAAGTAAGTTTTCCGTAGTTTG 20041702 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCG 204016 | || |||| |||||||| | ||||| || || || || ||| || || ||||||||| Sbjct 20041703 GCTCTGCCACATGAATGTTGAACGACTGACTCTGATCTAT-AAACGCACCTCGATCTGCG 20041761 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG 204076 ||||| || ||| ||| ||| || || |||||||| || ||| ||| || | Sbjct 20041762 GCCATCTTAATAGTGGACTTTACTGAGATTTCCCACACAGTTTTGTACAGATCGCGAACC 20041821 Query 204077 TGTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCTCATCCTC 204136 | || || | | || | ||| ||||| || || || | | || || Sbjct 20041822 TTCTGGGGGATGGCCTCAATATTTTGGATTGAGCCCCTGCTGGAAATGATTTGGTTCTTC 20041881 Query 204137 GTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196 | || || |||||| | ||| | | || |||| | || || |||| | | Sbjct 20041882 ATATCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGTTAACCACT 20041941 Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256 || || ||||| ||||| || | | ||| | | || | ||| | || ||||| | Sbjct 20041942 TGGAATTCTCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTGTAAGGCTCGAATGAT 20042001 Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316 |||||||| || | ||| ||||| || || |||||||| ||||| | | ||||||| Sbjct 20042002 TCGTTGTTACCCATAATTTGAGCAGTAGAAGCAGTGGGCATAGGAGCAACCAACAGGGAG 20042061 Query 204317 TTGCGCACACCGT 204329 || || ||||||| Sbjct 20042062 TTCCGGACACCGT 20042074 Score = 95.1 bits (104), Expect = 2e-14 Identities = 196/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 116118 GCAGACATGGGGTTGGGCGTACCCTTTAACGTTGCGAGCTACGCGCTACTGACTCATATT 116177 || |||||||| ||||||| ||||| ||| | || |||||| || || || || || Sbjct 6128109 GCCGACATGGGCCTGGGCGTGCCCTTCAACATCGCCTCCTACGCCCTGCTCACCCACATG 6128168 Query 116178 ATGGCACATTTGGCGGACCTGGAAGTCGGAGAATTGATACACTCTATTGGGGACGCGCAC 116237 || || ||| || ||| ||| | |||||| || | ||| | || || ||| ||||| Sbjct 6128169 ATCGCCCATGTGACGGGTCTGAAGCCCGGAGACTTTGTGCACACCATGGGCGACACGCAC 6128228 Query 116238 ATCTACACCAACCATGTGGCGCAGCTCGAGCTGCAGGTGAAGCGGGAGATAAGGCCTCCG 116297 |||||| |||||||||| || ||| || |||| || |||| | | || Sbjct 6128229 ATCTACCTGAACCATGTGGAGCCGCTGAAGGAGCAGCTGGAGCGCACGCCGCGTCCCTTC 6128288 Query 116298 CCTCAGCTAACAATCAACCCCCGGGTCAAATCTCTCGAAGATTTGACCTTTGAAGACCTG 116357 ||| |||| ||||| | || ||| | |||| || || || |||||| | Sbjct 6128289 CCTAAGCTGGTGATCAAGCGCCAGGTGCAGGACATCGAGGACTTCCGCTACGAAGACTTT 6128348 Query 116358 ACGATCACAGGCTACAACCCTCATCCTACCATTAAAATGGAAATGGCGGTGT 116409 ||| |||||||| ||| | || | ||||| ||||||||||| |||| Sbjct 6128349 GAGATAGTCGGCTACAATCCTTACCCCAAGATTAAGATGGAAATGGCTGTGT 6128400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795068925660800