Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 150 2e-31 seq1 131 2e-25 seq3325 122 1e-22 seq4812 98.7 1e-15 >seq2 Length=2985096 Score = 150 bits (166), Expect = 2e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| |||||| ||| |||||| ||||||||||||||||| | |||||| | Sbjct 124182 ACGCAGGACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGACAAAGTGCGTCC 124123 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || | |||||| |||||||| ||||| ||||||||||| | || | || |||||| Sbjct 124122 GTCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGAATGCCCTCCTT 124063 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||| | || | | || ||| | || || |||| ||||| Sbjct 124062 GTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGAT 124003 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| ||||| || || || ||||| ||||| Sbjct 124002 GGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 123967 Score = 129 bits (142), Expect = 7e-25 Identities = 146/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| | |||||| | || || | |||||| |||||||| Sbjct 123930 CTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGTCCATCCTCCAACTGCTTTCCGGCGAA 123871 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | || | || |||||||||| |||||| ||| | | Sbjct 123870 GATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATT 123811 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| | || || |||| |||||||| ||||| ||||| ||||| || Sbjct 123810 CTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTTTTCAC 123751 Query 46582 AAAGATTTGCATTTTG 46597 || |||||||| ||| Sbjct 123750 GAAAATTTGCATGTTG 123735 >seq1 Length=22559587 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| ||||| ||||||||||| || || || |||| || Sbjct 1136962 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCGTCCTC 1137021 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||||||||| |||| |||||||| || | || | | |||||||||| Sbjct 1137022 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 1137081 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | || | | ||||| | ||||| |||| |||||||| || Sbjct 1137082 GATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTT 1137141 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || ||||| || ||||||||||| Sbjct 1137142 GCCGGTGAGGGTTTTCACGAAGATTTGCAT 1137171 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| ||||| || |||||| || || || ||||| || || ||||| | Sbjct 20155535 CGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCA 20155476 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| |||||||| || | || | | || ||| Sbjct 20155475 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 20155416 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||| |||| | | | || || | ||| || || | |||||| Sbjct 20155415 TCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGATG 20155356 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || |||||||| || || || || ||||| ||||| ||| Sbjct 20155355 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATCTTG 20155317 >seq3325 Length=21082 Score = 122 bits (134), Expect = 1e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| |||||| || ||||| ||||| ||||| ||||| || ||||| |||| || Sbjct 20735 ACCAAATGCAAAGTCGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCC 20676 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || || ||||||||||| ||||| |||||||| || | || | || |||||||||| | Sbjct 20675 AGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGG 20616 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | | | | ||||| | || || |||| |||||||| ||| Sbjct 20615 ATCTTGGCCTTCACATTTTCAATGGTGTCTGATGGCTCAACTTCCAAGGTGATGGTCTTG 20556 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || || || || |||||||| |||||| Sbjct 20555 CCAGTAAGTGTCTTGACAAAGATCTGCATT 20526 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || || || ||||||||||| Sbjct 19578 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAA 19519 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | || |||||| ||| ||| || ||| | | Sbjct 19518 GATAAGACGCTGCTGATCTGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTCACATT 19459 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||| ||| | ||||| |||| || ||||| || || |||| || || || Sbjct 19458 CTCAATCGTATCGGAGGGCTCCACCTCCAAAGTAATGGTCTTTCCAGTCAAGGTCTTCAC 19399 Query 46582 AAAGATTTGCATTTTG 46597 |||||| ||||||||| Sbjct 19398 AAAGATCTGCATTTTG 19383 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || | |||||| | || || |||||||| |||||||| Sbjct 19806 CTCCTTCTGGATGTTGTAATCAGACAAAGTGCGACCATCCTCCAGCTGCTTTCCGGCGAA 19747 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | |||||||||| |||||| ||| | | Sbjct 19746 AATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 19687 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || | || || || | |||||||||||||| |||| || || || Sbjct 19686 CTCGATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTTTTGCCGGTCAAAGTCTTGAC 19627 Query 46582 AAAGATTTGCATT 46594 |||||| |||||| Sbjct 19626 AAAGATCTGCATT 19614 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || | |||||| | || || |||||||| |||||||| Sbjct 20034 CTCCTTCTGGATGTTGTAATCAGACAAAGTGCGACCATCCTCCAGCTGCTTTCCGGCGAA 19975 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | |||||||||| |||||| ||| | | Sbjct 19974 AATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 19915 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || | || || || | |||||||||||||| |||| || || || Sbjct 19914 CTCGATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTTTTGCCGGTCAAAGTCTTGAC 19855 Query 46582 AAAGATTTGCATT 46594 |||||| |||||| Sbjct 19854 AAAGATCTGCATT 19842 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || || || ||||||||||| Sbjct 20490 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAA 20431 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | || |||||||||| ||| || ||| | | Sbjct 20430 GATAAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATTTTAGCCTTTACGTT 20371 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| | || || || | |||||||| || || |||| || || || Sbjct 20370 TTCAATAGTGTCCGAAGGCTCTACTTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTGAC 20311 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 20310 GAAAATCTGCAT 20299 >seq4812 Length=908733 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| || || |||||||||||||| Sbjct 619866 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCCTCCAGTTGCTTGCCGGCGAA 619925 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||||||| |||||| ||||| | Sbjct 619926 GATGAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 619985 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || || | || || |||| || ||||| || || |||| || || || Sbjct 619986 TTCAATGGTATCAGAAGGCTCGACTTCCAGAGTAATGGTCTTTCCGGTCAAAGTCTTCAC 620045 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 620046 GAAGATTTGCAT 620057 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || || || ||||||||||| Sbjct 620322 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAA 620381 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | ||||||||| |||||| ||||| | Sbjct 620382 GATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 620441 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| | ||||| |||| |||||||| ||||| || || ||||| Sbjct 620442 TTCAATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGAGTTTT 620498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565177071633600