Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq2 102 6e-17 seq4812 89.7 4e-13 seq3325 89.7 4e-13 >seq2 Length=2985096 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39491 CGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGG 39550 |||| || |||| |||||| |||||||||||||| || || || ||||| || |||| Sbjct 124195 CGCCACCACGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGG 124136 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 |||| |||| | || ||||| || || ||| | || || ||||||||||| || | || Sbjct 124135 ACAAAGTGCGTCCGTCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGG 124076 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | ||| || ||||| || || || | || | | || || | || | Sbjct 124075 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAA 124016 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || || || || || | || || |||||||||||||| Sbjct 124015 CCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 123967 >seq4812 Length=908733 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| || ||||||||||| || || || || || || ||||||| | Sbjct 620059 CCACCACGCAGACGGAGAACCAAATGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGAC 620118 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| || | || || ||| | || || | |||||||||||| | ||| Sbjct 620119 AAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 620178 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || || ||||| || || ||| | | | | ||||||| ||||| Sbjct 620179 ATACCCTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCTGAAGGCTCCACC 620238 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| || || || || || || | |||||| |||||||||||||| Sbjct 620239 TCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTGACGAAGATCTGCAT 620285 >seq3325 Length=21082 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| || |||||||||||||| ||| || || || || ||||||| | Sbjct 20753 CCACCACGCAGACGGAGAACCAAATGCAAAGTCGATTCCTTCTGGATGTTGTAATCGGAC 20694 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | |||| | || |||| |||||| ||| | || || || ||||||||||| | ||| Sbjct 20693 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGG 20634 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||| || ||||| || || || | | | | ||||||| || || Sbjct 20633 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCTGATGGCTCAACT 20574 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || || || || | || || || ||||||||||| Sbjct 20573 TCCAAGGTGATGGTCTTGCCAGTAAGTGTCTTGACAAAGATCTGCAT 20527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347332852638440