Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq6677 132 4e-25 seq8559 127 2e-23 seq137 105 5e-17 >seq6677 Length=374367 Score = 132 bits (146), Expect = 4e-25 Identities = 269/397 (68%), Gaps = 7/397 (2%) Strand=Plus/Minus Query 517916 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCT 517975 || || | |||||| ||||| || || | ||| || || | || | || | ||| Sbjct 1496 TTTGCCCTTTCACAAGCTGTTCTCAGACGTCGCAAAGCCCTGGCATTTCCCTTGATATCC 1437 Query 517976 GTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAAT 518033 | || | || ||||| || || ||| || | ||| | || || || |||||||||| Sbjct 1436 GACTTGTGCTTCCTCTTAAACTCCTCAGCAAA--ATGGTTGACCAGCCGGTTATCAAAAT 1379 Query 518034 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT---CCATCTT 518090 | ||||| ||||| | ||| | ||| | ||| | |||| | ||| || || || | Sbjct 1378 CCTCACCACCCAAGTGAGTGTCTCCAGCCGTGGACTTTACCTCGAAGAGGGAGCCCTCAT 1319 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150 ||| | || || | ||||| ||| || ||||||| || ||||| || ||||| Sbjct 1318 CAATGGTCAGAATGGAGACATCGAAGGTGCCGCCACCCAGGTCGAAAATCAGAACATTGC 1259 Query 518151 TTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 518210 || | |||| ||||| | ||||| || || ||||| ||||| ||||| |||| Sbjct 1258 GCTCCCCCTTGAGGTTCTTATCCAATCCATAGGCCAAGGCAGCCGCAGTGGGTTCGTTAA 1199 Query 518211 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 518270 | || |||| ||||| || || ||||| || ||||| || || || |||| || Sbjct 1198 TGATCCTCAGCACATTCAGCCCCGCAATGGAACCCGCATCCTTGGTTGCCTGTCGCTGGC 1139 Query 518271 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 |||||||||||| || || || ||||| ||||| || Sbjct 1138 TATCGTTAAAATAGGCTGGCACCGTAATCACGGCGTC 1102 >seq8559 Length=59032 Score = 127 bits (140), Expect = 2e-23 Identities = 268/397 (68%), Gaps = 7/397 (2%) Strand=Plus/Plus Query 517916 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCT 517975 || || | |||||| |||||||| | | ||| || || | || | || | ||| Sbjct 19721 TTTGCCCTTTCACAAGCTGTCCTCAAACGTCGCAAAGCCCTGGCATTTCCCTTGATATCC 19780 Query 517976 GTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAAT 518033 | || | || ||||| || || ||| || | ||| | || || || |||||||||| Sbjct 19781 GACTTGTGCTTCCTCTTAAACTCCTCAGCAAA--ATGGTTGACCAGCCGGTTATCAAAAT 19838 Query 518034 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG---TCCATCTT 518090 | ||||| ||||| | ||| | ||| | ||| | |||| | ||| || || || | Sbjct 19839 CCTCACCACCCAAGTGAGTGTCTCCAGCCGTGGACTTTACCTCGAAGAGGGAGCCCTCAT 19898 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150 ||| | || || | ||||| ||| || ||||||| || ||||| || ||||| Sbjct 19899 CAATGGTCAGAATGGAGACATCGAAGGTGCCGCCACCCAGGTCGAAAATCAGAACATTGC 19958 Query 518151 TTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 518210 || | |||| ||||| | || || || || ||||| ||||| |||||||| | Sbjct 19959 GCTCCCCCTTGAGGTTCTTATCTAATCCGTAGGCCAAGGCAGCCGCAGTGGGTTCATTGA 20018 Query 518211 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 518270 | || |||| ||||| || |||||||| || ||||| || || || || | || Sbjct 20019 TGATCCTCAGCACATTTAGCCCAGCAATGGAGCCCGCATCCTTGGTCGCCTGACGCTGGC 20078 Query 518271 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 |||||| ||||| || || || ||||| |||||||| Sbjct 20079 TATCGTTGAAATAGGCTGGCACCGTAATTACGGCATC 20115 >seq137 Length=289679 Score = 105 bits (116), Expect = 5e-17 Identities = 180/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 518453 AATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAAT 518512 || ||||||| ||||| || || || ||| ||| | || | | ||||| || Sbjct 77019 AAGGGCCAGTGCTTCATGTCAGACTGCACAGCAGAGTCCTCGAACTTGCGGCCAATCAAA 77078 Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCT 518572 || || ||||| || || || | ||| || || || || | || | ||||| ||||| Sbjct 77079 CGCTTGGCATCGAAGATCGTCTGGGTCGGGTTCATGGCCACCTGGTTCTTGGCGGCATCG 77138 Query 518573 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632 || |||||| | || || || || || | |||||| |||||||| || |||||||| || Sbjct 77139 CCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGATGGAGTGGTACGATTACCCTGG 77198 Query 518633 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 518692 || || || || || || || || |||| || | || || || || | || || Sbjct 77199 TCGTTGGCGATGATCTCGACCTTGCCATGCTGGAACACTCCCACGCACGAGTAGGTCGTG 77258 Query 518693 CCTAAATCAATACCAATAGCA 518713 || ||||||||||||| |||| Sbjct 77259 CCCAAATCAATACCAACAGCA 77279 Score = 105 bits (116), Expect = 5e-17 Identities = 180/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 518453 AATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAAT 518512 || ||||||| ||||| || || || ||| ||| | || | | ||||| || Sbjct 85062 AAGGGCCAGTGCTTCATGTCAGACTGCACAGCAGAGTCCTCGAACTTGCGGCCAATCAAA 85121 Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCT 518572 || || ||||| || || || | ||| || || || || | || | ||||| ||||| Sbjct 85122 CGCTTGGCATCGAAGATCGTCTGGGTCGGGTTCATGGCCACCTGGTTCTTGGCGGCATCG 85181 Query 518573 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632 || |||||| | || || || || || | |||||| |||||||| || |||||||| || Sbjct 85182 CCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGATGGAGTGGTACGATTACCCTGG 85241 Query 518633 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 518692 || || || || || || || || |||| || | || || || || | || || Sbjct 85242 TCGTTGGCGATGATCTCGACCTTGCCATGCTGGAACACTCCCACGCACGAGTAGGTCGTG 85301 Query 518693 CCTAAATCAATACCAATAGCA 518713 || ||||||||||||| |||| Sbjct 85302 CCCAAATCAATACCAACAGCA 85322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780391669808080