Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 2e-14 seq4563 86.0 8e-12 >seq1 Length=22559587 Score = 95.1 bits (104), Expect = 2e-14 Identities = 170/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 176020 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 176079 |||||| || ||| | | || ||||| |||||||| | ||||| || ||||| ||||| Sbjct 4077376 ATCCTTGCCGCCCGTCAAGCGAGTACCGAACTGACCGCGTGGCTCCAGGAGATTTATATT 4077317 Query 176080 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTG-TCCGCGAGAGAGACTTCAC 176138 |||| |||| |||| | |||| || || || || || || || || || |||| Sbjct 4077316 ATTTGCGCCCACATAGTTCTGGGCCAGATTAACGATGGTCATCTGC-AGCGAAACCTCAC 4077258 Query 176139 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 176198 ||||||| || || | |||| ||||| | | | || ||| ||||| || | |||| Sbjct 4077257 CGTGGTGATAGGCCGACATCTCGGCGACGGAACCAGACAGCTGGGCCACCTTAACCTCAC 4077198 Query 176199 CCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 176258 |||| ||| | | ||| || | | |||| |||||||| || ||||| | || | Sbjct 4077197 GCTTGTCGTTCCTCTTGAAGCAGGTGAACATCACCTTGCGCTGACCTGGCTTCAAGCCGT 4077138 Query 176259 CCGCCA 176264 || ||| Sbjct 4077137 CCACCA 4077132 >seq4563 Length=14502029 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| ||||||||| || ||| | | |||| ||||| |||||||| ||| Sbjct 3739465 GTCGAGGGCATCTTCTTCAGCGGCAGCTTTGCCTCCATTTTCTGGCTGAAGAAGCGCGGT 3739524 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 || ||||| || || ||||||||||||||||||||| || |||||||| Sbjct 3739525 CTGATGCCGGGACTGACCTTCTCCAACGAGCTTATCTCCCGCGACGAGGG 3739574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620675049449600