Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq3275 118 1e-21 >seq3275 Length=287013 Score = 118 bits (130), Expect = 1e-21 Identities = 201/283 (71%), Gaps = 10/283 (4%) Strand=Plus/Plus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTA-TTCCTATGGGATATGGAGGTCCTCA 153805 ||||||||||| || | | | | | || ||| | ||||| |||| ||||| || || || Sbjct 260523 GATATTGCTGTGGGAACT-TCCCAGCGTCTGGGAGTTCCTCTGGGCTATGGTGGACCCCA 260581 Query 153806 TGCTGCATTCTTTGCAACAACAGACA-AGTATAA-GAGAAAGATACCTGGCAGAATTGTA 153863 ||||| |||||| || | || ||| ||| | | | ||| || ||||| || | Sbjct 260582 TGCTGGATTCTTCGC--CTGCAAACAGAGTTTGGTGCGCTTGATGCCCGGCAGGATGATC 260639 Query 153864 GGTCAGTCAGTAG--ATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAG 153921 || |||| || | | || || ||| | || ||| |||| || || || || |||| Sbjct 260640 GGG--GTCACCAGGGACATGGACGGAAATGATGCCTACCGATTGGCCCTGCAAACCAGAG 260697 Query 153922 AGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGG 153981 ||||||| ||| | |||||||| || || |||||||||||||| |||||||| || |||| Sbjct 260698 AGCAGCACATCCGAAGAGACAAGGCCACGAGTAACATCTGCACGGCTCAGGCTCTTCTGG 260757 Query 153982 CTAATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGG 154024 | |||||||| | | ||||| || |||||| | || || Sbjct 260758 CCAATATGTCGGCCATGTATGCCATTTACCATGGTCCCGAGGG 260800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579149955411200