Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3325 156 9e-33 seq4812 145 2e-29 seq1 134 3e-26 >seq3325 Length=21082 Score = 156 bits (172), Expect = 9e-33 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| | || ||||| || ||||| |||||||||| || || | ||||| || Sbjct 20280 AACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGACAGGGTGCGACCATCCTC 20221 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| || || || || ||||| || ||||| || |||||||| Sbjct 20220 AAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCTTG 20161 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||||||| ||||||||||||||| |||||| || ||||| | ||||| Sbjct 20160 GATCTTAGCCTTGACGTTTTCAATGGTGTCCGAAGGTTCCACCTCCAGGGTGATGGTCTT 20101 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | |||||| || || | |||||| Sbjct 20100 GCCAGTAAGAGTTTTGACAAAGATCTGCATT 20070 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| |||| || || | || || || || || Sbjct 20502 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGTTG 20443 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||||||||| || || || ||||| || ||||| || ||||| || ||||| Sbjct 20442 TTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATTTT 20383 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| ||||| ||||||||| || |||||||| || | |||||||| || Sbjct 20382 AGCCTTTACGTTTTCAATAGTGTCCGAAGGCTCTACTTCAAGAGTGATGGTCTTTCCGGT 20323 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || ||||| | ||||| Sbjct 20322 CAAAGTCTTGACGAAAATCTGCAT 20299 Score = 111 bits (122), Expect = 3e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| |||| || || | || || || || || Sbjct 19590 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGTTG 19531 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||||||||| || || || ||||| || ||||| || || || || ||||| Sbjct 19530 TTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATGCCCTCCTTATCCTGGATTTT 19471 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || |||||||| || || || ||||| || | |||| |||||||| || Sbjct 19470 GGCCTTCACATTCTCAATCGTATCGGAGGGCTCCACCTCCAAAGTAATGGTCTTTCCAGT 19411 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 ||| || || || || | ||||||| Sbjct 19410 CAAGGTCTTCACAAAGATCTGCATTT 19385 Score = 93.3 bits (102), Expect = 9e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || || || || || |||||||||| || || | || || || || || || || Sbjct 20724 AGTCGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCCAGTTGTTTGCC 20665 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 |||||||| | ||| || || ||||| || ||||| || ||||| || || || ||| Sbjct 20664 GGCGAAGATCAATCGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 20605 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || || ||||||||||| || || ||||| | ||| | ||||| || || | || Sbjct 20604 CACATTTTCAATGGTGTCTGATGGCTCAACTTCCAAGGTGATGGTCTTGCCAGTAAGTGT 20545 Query 195123 TTTTACGAACACTTGCATT 195141 || || || | |||||| Sbjct 20544 CTTGACAAAGATCTGCATT 20526 >seq4812 Length=908733 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| || ||||| |||||||||| | ||| | ||||| || |||||||| || Sbjct 620089 GTCGACTCCTTCTGAATGTTGTAATCGGACAAAGTGCGACCATCCTCAAGCTGCTTTCCG 620148 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| || || || || ||||| ||||| || || |||||||| || || ||| Sbjct 620149 GCGAAGATGAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCTTTG 620208 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| ||||||||||| ||| ||||| || ||||| | ||||| || || | |||| Sbjct 620209 ACGTTTTCAATGGTGTCTGAAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGAGTT 620268 Query 195124 TTTACGAACACTTGCATT 195141 || ||||| | |||||| Sbjct 620269 TTGACGAAGATCTGCATT 620286 Score = 145 bits (160), Expect = 2e-29 Identities = 149/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 194947 GACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCG 195006 ||||| || || || || ||||||| | ||| | || || || |||||||| || ||| Sbjct 620500 GACTCCTTCTGGATGTTATAATCGGACAAAGTGCGACCGTCCTCAAGCTGCTTTCCGGCG 620559 Query 195007 AAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACG 195066 |||||||| || || || ||||| ||||| || || |||||||| ||||| ||| ||| Sbjct 620560 AAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATTTTGGCCTTTACG 620619 Query 195067 TTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTT 195126 || ||||||||||||||| ||||| || ||||| | ||||| || || | |||||| Sbjct 620620 TTTTCAATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTG 620679 Query 195127 ACGAACACTTGCATT 195141 ||||| | |||||| Sbjct 620680 ACGAAGATCTGCATT 620694 Score = 129 bits (142), Expect = 1e-24 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| |||| || || | || || || || || Sbjct 620310 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGTTG 620369 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||||||||| || || || ||||| ||||| || || |||||||| || || Sbjct 620370 TTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTT 620429 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| ||||||||||||||| ||||| || ||||| | ||||| || || Sbjct 620430 GGCCTTGACGTTTTCAATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGT 620489 Query 195117 CAAAGTTTT 195125 | |||||| Sbjct 620490 AAGAGTTTT 620498 >seq1 Length=22559587 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||||||||| || ||||| || || || | || || | |||||||| ||||| Sbjct 20155524 GTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 20155465 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || || ||||||||||| ||||||||||| ||||| || Sbjct 20155464 CTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTT 20155405 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| || || || || |||||| ||| || ||||| || | ||||| || || Sbjct 20155404 GGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGATGGTCTTGCCCGT 20155345 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 20155344 GAGGGTCTTCACGAAGATCTGCAT 20155321 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| |||| || |||| || || || Sbjct 1136963 ACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCGTCCTCC 1137022 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || || ||||| || || || || ||||| || Sbjct 1137023 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 1137082 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || ||||| |||||||||||| ||||| || | ||| | ||||| Sbjct 1137083 ATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTG 1137142 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | |||||| Sbjct 1137143 CCGGTGAGGGTTTTCACGAAGATTTGCAT 1137171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109358211777560