Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 seq4812 104 2e-17 seq3325 100 2e-16 >seq1 Length=22559587 Score = 109 bits (120), Expect = 4e-19 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||||||||||||||| || ||| | || |||| ||| Sbjct 20155529 ACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCC 20155470 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || ||||| ||| | || | || || ||||| | Sbjct 20155469 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGA 20155410 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 ||||| |||||| || | ||||| | ||| | || || || | || ||||| Sbjct 20155409 ATCTTGGCTTTGAC--AT--TTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGATGGT 20155354 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || |||||||| |||||||| ||||||||||| || Sbjct 20155353 CTTGCCCGTGAGGGTCTTCACGAAGATCTGCATCTT 20155318 Score = 89.7 bits (98), Expect = 3e-13 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| |||| | || |||||||| || ||||| || Sbjct 1136981 TCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 1137040 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||||||||||| ||||| || || || Sbjct 1137041 ATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCAC--AT 1137098 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| | ||| | ||| || || | ||| ||||| || || ||||| || || Sbjct 1137099 --TCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTT 1137156 Query 34967 CACAAAGATCTGCAT 34981 ||| ||||| ||||| Sbjct 1137157 CACGAAGATTTGCAT 1137171 >seq4812 Length=908733 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | ||| | || ||||| || || ||||| || Sbjct 619867 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCCTCCAGTTGCTTGCCGGCGAAG 619926 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | ||||||||||| ||||| |||||| | Sbjct 619927 ATGAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTT 619986 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || || | || ||||| ||||| || | ||||||||| Sbjct 619987 TCAATGGTATCAGAAGGCTCGACTTCCAGAGTAATGGTCTTTCCGGTCAAAGTCTTCACG 620046 Query 34971 AAGATCTGCATA 34982 ||||| |||||| Sbjct 620047 AAGATTTGCATA 620058 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| || || || | | || |||| || ||||| |||||||| || Sbjct 620095 TCCTTCTGAATGTTGTAATCGGACAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAG 620154 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||||||||||| ||||| ||||||| | Sbjct 620155 ATGAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCTTTGACGTTT 620214 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || || | ||| ||||| || || || ||||| || || Sbjct 620215 TCAATGGTGTCTGAAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTGACG 620274 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 620275 AAGATCTGCAT 620285 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || ||| | ||| | || ||| Sbjct 620305 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 620364 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| ||||| || || || || ||||| ||| | || | ||||||||||| Sbjct 620365 AGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGG 620424 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | | || | || | ||| || || | ||| ||||| || Sbjct 620425 ATCTTGGCCTTGACGTTTTCAATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTG 620484 Query 34953 CCCGTGAGAGTCTTC 34967 || || ||||| ||| Sbjct 620485 CCAGTAAGAGTTTTC 620499 >seq3325 Length=21082 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| ||||| || || || | | || |||| ||| Sbjct 19823 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTGCGACCATCCTCC 19764 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || || || ||||| ||| | || | ||||||||||| Sbjct 19763 AGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 19704 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | ||| | |||||| || | || ||||||| Sbjct 19703 ATCTTGGCCTTCAC--ATTCTCGATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTTT 19646 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | |||||| |||||||||||||| Sbjct 19645 TGCCGGTCAAAGTCTTGACAAAGATCTGCAT 19615 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| ||||| || || || | | || |||| ||| Sbjct 20051 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTGCGACCATCCTCC 19992 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || || || ||||| ||| | || | ||||||||||| Sbjct 19991 AGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 19932 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | ||| | |||||| || | || ||||||| Sbjct 19931 ATCTTGGCCTTCAC--ATTCTCGATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTTT 19874 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | |||||| |||||||||||||| Sbjct 19873 TGCCGGTCAAAGTCTTGACAAAGATCTGCAT 19843 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | || || ||||||||||| || || || ||| | || |||| || Sbjct 20280 AACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGACAGGGTGCGACCATCCTC 20221 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| |||||||| || || || || ||||| ||| | || | ||||||||||| Sbjct 20220 AAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCTTG 20161 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | | || | || | || || || | ||| ||||| || Sbjct 20160 GATCTTAGCCTTGACGTTTTCAATGGTGTCCGAAGGTTCCACCTCCAGGGTGATGGTCTT 20101 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || ||||| || |||||||||||||| Sbjct 20100 GCCAGTAAGAGTTTTGACAAAGATCTGCAT 20071 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | || ||| ||||| ||||| || || || ||| | ||| | || || Sbjct 20736 AACCAAATGCAAAGTCGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTC 20677 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||| ||||| ||||| || || | ||| ||||| ||| | || | ||||||||||| Sbjct 20676 CAGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTG 20617 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| || || | | || | || | |||||| || | ||| ||||| || Sbjct 20616 GATCTTGGCCTTCACATTTTCAATGGTGTCTGATGGCTCAACTTCCAAGGTGATGGTCTT 20557 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| |||||||||||||| Sbjct 20556 GCCAGTAAGTGTCTTGACAAAGATCTGCAT 20527 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || ||| | ||| | || ||| Sbjct 19595 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 19536 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| ||||| || || || || ||||| ||| | || | |||||||| || Sbjct 19535 AGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATGCCCTCCTTATCCTGG 19476 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || || || || || |||| || || ||| || || | || ||||| | Sbjct 19475 ATTTTGGCCTTCAC--ATTCTCAATCGTATCGGAGGGCTCCACCTCCAAAGTAATGGTCT 19418 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||| || | |||||||||||||||||||| || Sbjct 19417 TTCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 19384 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || ||| | ||| | || ||| Sbjct 20507 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 20448 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| ||||| || || || || ||||| ||| | || | ||||||||||| Sbjct 20447 AGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGG 20388 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || || ||| | | || | || | ||| || || | || ||||| ||| Sbjct 20387 ATTTTAGCCTTTACGTTTTCAATAGTGTCCGAAGGCTCTACTTCAAGAGTGATGGTCTTT 20328 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | |||||| || || ||||||||| Sbjct 20327 CCGGTCAAAGTCTTGACGAAAATCTGCATA 20298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324599257823040