Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 212 7e-50 >seq1 Length=22559587 Score = 212 bits (234), Expect = 7e-50 Identities = 1163/1862 (62%), Gaps = 40/1862 (2%) Strand=Plus/Plus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || || ||||| |||| ||| | || |||| ||||| || | |||||||| ||| Sbjct 20041585 TTGTCTACAGTGAACTGAATAGCGTTTGCAGCTGGCTTTGTGCGCAGGTAATACATTCCA 20041644 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 || |||| ||| |||| ||| || || || ||| | ||| || | || Sbjct 20041645 GTTTTTAGACCAGCTTTCCAGGAATAAAAGTGTATGGAAGTAAGTTTTCCGTAGTTTGGC 20041704 Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153 |||| | |||||| || | || ||||||||||| ||||| ||||||| ||| || ||| Sbjct 20041705 TCTGCCACATGAATGTTGAACGACTGACTCTGATCTATAAACGCACCTCGATCTGCGGCC 20041764 Query 47154 ATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCT 47213 || | | | | | || || || ||||| || ||||| || | | || || Sbjct 20041765 ATCTTAATAGTGGACTTTACTGAGATTTCCCACACAGTTTTGTACAGATCGCGAAC--CT 20041822 Query 47214 TCTGGGAGATT-----AGTATTTTGAATAGATCCTCCgttttctataattttgtttttta 47268 |||||| ||| | ||||||| || || || | | | || |||| ||| || | Sbjct 20041823 TCTGGGGGATGGCCTCAATATTTTGGATTGAGCCCCTGCTGGAAATGATTTGGTTCTTCA 20041882 Query 47269 attcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTT 47328 || | ||| | | | || |||| |||| | |||| | ||||| | || Sbjct 20041883 TATCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGTTAACCACTT 20041942 Query 47329 GAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATT 47388 | ||||||||||| || |||| | | |||| ||||| |||| || || || | |||| Sbjct 20041943 GGAATTCTCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTGTAAGGCTCGAATGATT 20042002 Query 47389 CATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTAT 47448 | || || || | |||||||||||| || || || ||||| | ||||| || | | | Sbjct 20042003 CGTTGTTACCCATAATTTGAGCAGTAGAAGCAGTGGGCATAGGAGCAACCAACAGGGAGT 20042062 Query 47449 TTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTC---CAATCCCAAAGATCTG 47505 | | || || | || | || ||||| || |||||||| | | Sbjct 20042063 TCCGGACACCGTGCTTCTTGAT---GGACTCCTTCAGTTTCTGCCAGTCCCAAAGGTTCG 20042119 Query 47506 ATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTAT 47565 ||| | | ||| | || || || ||||||||||| || | || || | || Sbjct 20042120 TTGGCTCTTTGTCCCACATGTCGTACTGCAGAATTCCTTTGCTCACGGGGCTTCCCTCAT 20042179 Query 47566 ATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAAT 47625 | |||| ||| ||||| | | | || ||||||||||| |||||||| || | || | Sbjct 20042180 AGGTTTCATATGGACCTTCGATCTGGGCCAGTTCACAACTGGCTTCCAAAGCGCCGTAGT 20042239 Query 47626 ATATTGTTTCAAATATTTTTATGTTT--AGATTCCTTGCTTCTGATGA--TTCAAAAGGA 47681 | || ||||| || || | || || ||| || ||||| || | |||| | || Sbjct 20042240 AGATAGTTTCGAAAATCTGC-TGATTCAAGAGGCCG-GCTTC--ATCACTTTCATAGGGG 20042295 Query 47682 TANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGA 47741 | || | || || ||||| || ||||| || || | || | ||| Sbjct 20042296 AACCGCATGAGAATCAAGGCGTCAGCGAATCCCTGGACACCGATGCCCACGGGACGATGC 20042355 Query 47742 GTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTT 47801 | ||| || || || ||||| | || || ||| ||||| || || || || Sbjct 20042356 CTCAAATTGGATTTCTTGGCCTCTGGCAGGGGGTAGAAGTTAATATCGATTATCTTGTTA 20042415 Query 47802 AGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAA-TTTATTAAAATCAAACTTGTTATT 47860 ||| || ||| ||||| ||| || ||||| | | || | Sbjct 20042416 AGATTCTTGGTAACCGTCTTGGTAACTTC-CTTAAGTTTCTTGAAATCGTATGTCTTCTC 20042474 Query 47861 TATA---ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGG 47917 | |||||| | || || || || ||||| | || || || || | ||||| || Sbjct 20042475 GGGAGTGACAAACATGTTGAGGGCGATGGATGCCAAGTTGCAAACTGCAATCTCATCCGG 20042534 Query 47918 ATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTG 47977 | | ||| | || ||||| | || | ||| | ||| ||||| || || | ||| || Sbjct 20042535 AGCGGAATACTCTACGATTTCTGTGCACAAATTGCTACACTTGATGGTGCCGACATTCTG 20042594 Query 47978 ATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTAT 48037 || || | |||| || || ||||| | | ||| | || |||||||||| | Sbjct 20042595 CTGGTTGCTCTTCCTGTTGCAGGCATCCTTAAACAACATGTAGGGGTTTCCAGTTTCGAC 20042654 Query 48038 CTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTA---GCTTT 48094 ||| | |||||| || | ||| | | |||||| ||||| ||| || Sbjct 20042655 CTGTGCTTCAATAATGGCAAACCACAGGGATTGAGCCTT---AACAGTTCTGTTGGCACG 20042711 Query 48095 ATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAA 48154 | || || || ||||| ||| ||||| || |||||||| || |||||| | | Sbjct 20042712 ACCCTCTTGCTCATATTTCTCATACAACTTTTCGAATTCATCGCCCCACACATCGTGAAG 20042771 Query 48155 CCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCAT 48214 |||||| |||| || || ||||| | |||||||| ||| | || | |||| Sbjct 20042772 CCCAGGGCATTTATGTGGGCACATTAGCGACCAATCTCCATTGGCCTCGACGCGCTTCAT 20042831 Query 48215 AAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCC 48274 ||| | ||| |||||||| || || ||| | ||| | | | ||| || ||||| Sbjct 20042832 AAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGGGCCCGATTTTCCTCCTTGCC 20042891 Query 48275 ACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATAT 48334 | || | |||||||| || || || | | ||| | ||||| || || | || || Sbjct 20042892 GGTGTTTTTCTTAAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAAT 20042951 Query 48335 TGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATA 48394 || | |||| || || || |||||||||||| | ||| | || |||||| | Sbjct 20042952 GGCAAAGGCACCGGGACGCTTGCCACCTCCTTGATCCACATAACGCGCCACATTGTTGAA 20043011 Query 48395 AACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCC 48454 || || ||||| || || | ||||| ||| | ||||| ||||| |||| | | || Sbjct 20043012 GACCCTCAACATGGGAACCAAGCCATTGGATGTGCCATTCGTTCCGCAAATCGAGGTGCC 20043071 Query 48455 ACTAGCTCTTATATTACTAATTGA----AATACCTATACCACCTGCCATTTTAGATATTA 48510 | || | || ||| || || || || || || ||| ||| || || | Sbjct 20043072 CTTTGCCCGGAT----GCAATGGACGTTAAGTCCAATGCCGCCGGCCGATTTCGAGATCA 20043127 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 |||||| ||| | || | | |||| || || ||| || | |||| | || | Sbjct 20043128 AGGCACACTGTTCCACGGACTTAAAAATGCCCTCGATAGAGTCGGCCGTCATGGTCAAGA 20043187 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 | || ||| |||| ||||| || || | | ||| | |||||| || |||| Sbjct 20043188 GGAAGCAAGACGACAGCTGCGGGCGATTTGTGGCAGCGGCAAAAAGTGTTGGCGACGCAT 20043247 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT 48690 | | || || ||| || || | ||||| ||||| | | | |||||||||| Sbjct 20043248 GCGTGAAGTATCGCTCCGACAAGAGATTATAAGTTTCCACGGCCGCATCTATATCCTCCC 20043307 Query 48691 GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTAT 48750 ||| || || || | || ||||| ||||||| ||| || | || ||||||| | Sbjct 20043308 CATGGATTCCGATCGCCACGCGCATCAACATATGTTGCGGACGCTCTGCAATTTTTCCGT 20043367 Query 48751 TTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGT 48810 || | |||| ||||| || ||| | || ||||| ||||| ||||| || ||||| Sbjct 20043368 TTCTCTTCAGCAGATAGGAACGTTCTAGGGTCTTAAACCCAAAGTAGTTATACCCAAAGT 20043427 Query 48811 CG 48812 || Sbjct 20043428 CG 20043429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562047811195200