Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1 217 1e-51 >seq1 Length=22559587 Score = 217 bits (240), Expect = 1e-51 Identities = 456/671 (68%), Gaps = 13/671 (2%) Strand=Plus/Minus Query 29725 AAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCC 29784 ||||| || | || || |||| | || ||| ||| | || ||||| | ||| Sbjct 6128332 AAGTCCTCGATGTCCTGCACCTGGCGCTTGATCACCAGCTTAGGGAAGGGACGCGGCGTG 6128273 Query 29785 CTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGG 29844 | ||| ||||| ||||||||| ||||| || | |||||||| ||| | ||| |||| | Sbjct 6128272 CGCTCCAGCTGCTCCTTCAGCGGCTCCACATGGTTCAGGTAGATGTGCGTGTCGCCCATG 6128213 Query 29845 GTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGA 29904 ||||| ||||| ||||| || | || || || || || || ||||||| ||||| || Sbjct 6128212 GTGTGCACAAAGTCTCCGGGCTTCAGACCCGTCACATGGGCGATCATGTGGGTGAGCAGG 6128153 Query 29905 GAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGC 29964 | |||| ||||||||| ||||| || || || |||||||| | ||||||||| ||| Sbjct 6128152 GCGTAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCTCTGGTACAGC 6128093 Query 29965 TGACACGAGAGCTCTCCGT-CG-CTC----ACGTAAAACTGACACATGGTGTGGCACGGA 30018 || || || ||||| ||| || ||| ||||| ||||| || | |||||| ||| Sbjct 6128092 TGGCAGGAAAGCTCACCGCGCGTCTCTGAGACGTAGAACTGTGCCAGGCAGTGGCATGGA 6128033 Query 30019 GGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT 30078 ||||| ||||| | ||| || ||||| || ||| ||||||||||||||| Sbjct 6128032 GGAAGGGCCATCTTTGGTATGTCCAGTGGATTCCATGCCGACATGATGATGCGCCTGTCC 6127973 Query 30079 TCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAG 30138 || || ||| ||||| || | | | ||||||| || | ||| | || | Sbjct 6127972 GAAGGATTATTCTTGATGGTCTCGATCACCTGGCGCAGCTGGTCGATGCCCTTGCCGTTG 6127913 Query 30139 TAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACAC 30197 || || | | ||| | | |||||| || || ||||| | ||||||||| ||||| || Sbjct 6127912 TAATCGTCGTCGCATTTGC-CGTACTCCGCCCCAAAATGACGCCACTGGAAGCCGTATAC 6127854 Query 30198 CGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGA 30257 ||| |||||||| || | | | | | | ||| |||||||| || || |||| Sbjct 6127853 CGGGCCCAGGTCGCCGACGGCGCGCTCCGTGTGCCCCAGCTTGTCCAGGAACTCCCTGGT 6127794 Query 30258 ACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 | ||| |||||||||| | || ||| || ||| |||| || || || Sbjct 6127793 GCTGTTCTCGTCCCAGATGTGCACGTTCTTATCCTGCAGCAGCTTGGCGTCCGTCTTGCC 6127734 Query 30318 TCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTG 30375 | |||||||| ||||||||||| | || || | || ||||| | |||||| || Sbjct 6127733 TGCCACGAACCAGAGCAGCTCCTCGGCCAC--CCCGCGAAAGAAGACGCGCTTGGTGGTC 6127676 Query 30376 AGGAG-GGGAA 30385 || || ||||| Sbjct 6127675 AGCAGCGGGAA 6127665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408574373365640