Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3325 125 6e-24 seq2 89.7 4e-13 seq4563 87.8 1e-12 >seq3325 Length=21082 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | || ||| | || || |||||||| || || || || || |||||||| | Sbjct 19843 TTCCACCGCGTAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAG 19784 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | |||| |||| ||||| || || || || | |||||| ||||| || | Sbjct 19783 ACAAAGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGG 19724 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || || || || || || || || || ||| | || | || ||||| | || | Sbjct 19723 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCAGAAGGCTCAA 19664 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||||| ||||||||||| ||||| || ||||| |||||||| Sbjct 19663 CTTCAAGAGTGATGGTTTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 19615 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | || ||| | || || |||||||| || || || || || |||||||| | Sbjct 20071 TTCCACCGCGTAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAG 20012 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | |||| |||| ||||| || || || || | |||||| ||||| || | Sbjct 20011 ACAAAGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGG 19952 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || || || || || || || || || ||| | || | || ||||| | || | Sbjct 19951 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCAGAAGGCTCAA 19892 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||||| ||||||||||| ||||| || ||||| |||||||| Sbjct 19891 CTTCAAGAGTGATGGTTTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 19843 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| || || || || || ||||| |||| | || | | || ||| Sbjct 20507 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 20448 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| || || || || || | |||||| ||||| || || ||||| || || || || Sbjct 20447 AGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGG 20388 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||||| |||| | |||||| || | || ||||||||||||| || || Sbjct 20387 ATTTTAGCCTTTACGTTTTCAATAGTGTCCGAAGGCTCTACTTCAAGAGTGATGGTCTTT 20328 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| ||||| || || || |||||||| Sbjct 20327 CCGGTCAAAGTCTTGACGAAAATCTGCAT 20299 >seq2 Length=2985096 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | ||||| || || || |||||||| |||| | ||| | | || ||| Sbjct 124175 ACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGACAAAGTGCGTCCGTCCTCC 124116 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| || || || ||||||||||| || || || |||||||| || || || || Sbjct 124115 AACTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 124056 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | || || || | || || || | ||||| || ||| Sbjct 124055 ATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTTG 123996 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || || || |||||||| Sbjct 123995 CCAGTCAGGGTCTTCACGAAGATCTGCAT 123967 >seq4563 Length=14502029 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 13651 ATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCG 13710 || ||| || || || || || | | | ||||||| ||| | || || | || | || Sbjct 8076741 ATCGAACTTGCGCTTGCACCCCTGATAGTTCATGTATCGAACCTTGCCGAAAATGGCCCG 8076800 Query 13711 CTCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTT 13770 |||| ||||| | ||||| |||| | || ||||||||||| ||| |||| || || Sbjct 8076801 CTCCTTCCAGCCCATGTCGTGGATTCCCCCAATGGACCACATGCAGCCGACATATCCATT 8076860 Query 13771 GGGATCGCGTCCATCCAAACTGTATTTGTCGTT 13803 ||||||||||||||| | ||||| ||||| || Sbjct 8076861 GGGATCGCGTCCATCGAGGCTGTACTTGTCATT 8076893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396236478698760