Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3325 111 1e-19 seq4812 102 6e-17 seq2 100 2e-16 seq1 89.7 4e-13 >seq3325 Length=21082 Score = 111 bits (122), Expect = 1e-19 Identities = 168/236 (71%), Gaps = 11/236 (5%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | |||||| || || ||| ||| || || || ||||||||||| Sbjct 21067 CCACCGCGTAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAC 21008 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | ||| | || |||| |||||| ||||| || || || ||||| ||||| | ||| Sbjct 21007 AAAGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGG 20948 Query 48660 ACGCCCTCCTTGTC---GCTAATC----TTTTGTTTT--ACAGAACCCACAGACTCTGAC 48710 | ||||||||||| | | || || ||||| | || || || |||| Sbjct 20947 ATTCCCTCCTTGTCCTGGATTTTCGCCTTTACGTTTTCAATAGTGTCCGAAGGCTCT--T 20890 Query 48711 GCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | ||||||||| | || || || ||||| |||||||| ||||| ||||||||||| Sbjct 20889 GGCTCCACCTCAAGAGTGATTGTCTTTCCGGTCAAAGTCTTTACGAAAATCTGCAT 20834 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | |||||| || || ||| ||| || || || ||||||||||| Sbjct 19841 CCACCGCGTAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAC 19782 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | ||| | || |||| |||||| ||||| || || || ||||| ||||| | ||| Sbjct 19781 AAAGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGG 19722 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || ||| | | | || || | ||| || Sbjct 19721 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCAGAAGGCTCAACT 19662 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || |||||||| || ||||| |||||||| Sbjct 19661 TCAAGAGTGATGGTTTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 19615 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | |||||| || || ||| ||| || || || ||||||||||| Sbjct 20069 CCACCGCGTAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAC 20010 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | ||| | || |||| |||||| ||||| || || || ||||| ||||| | ||| Sbjct 20009 AAAGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGG 19950 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || ||| | | | || || | ||| || Sbjct 19949 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCAGAAGGCTCAACT 19890 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || |||||||| || ||||| |||||||| Sbjct 19889 TCAAGAGTGATGGTTTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 19843 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || || || ||||| || || || | || |||| ||| Sbjct 19595 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 19536 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || || ||||| || || || ||||| ||||| | ||| | ||||||||| || Sbjct 19535 AGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATGCCCTCCTTATCCTGG 19476 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | || || | ||||||||||| ||||| || ||| Sbjct 19475 ATTTTGGCCTTCACATTCTCAATCGTATCGGAGGGCTCCACCTCCAAAGTAATGGTCTTT 19416 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || ||||| |||||||| Sbjct 19415 CCAGTCAAGGTCTTCACAAAGATCTGCAT 19387 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || || || ||||| || || || | || |||| ||| Sbjct 20507 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 20448 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || || ||||| || || || ||||| ||||| | ||| | |||||||||||| Sbjct 20447 AGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGG 20388 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||||| | | || || || | ||| || || | || || || ||| Sbjct 20387 ATTTTAGCCTTTACGTTTTCAATAGTGTCCGAAGGCTCTACTTCAAGAGTGATGGTCTTT 20328 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || || ||||||||||| Sbjct 20327 CCGGTCAAAGTCTTGACGAAAATCTGCAT 20299 >seq4812 Length=908733 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | || ||| || ||||| |||||||| || | | | ||| | || || Sbjct 620077 ACCAAATGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGACAAAGTGCGACCATCCTCA 620136 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || || || ||||| ||||| | ||||| ||||||||||| Sbjct 620137 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGG 620196 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| || | | | ||||| | ||||||||||| || || || || Sbjct 620197 ATCTTGGCTTTGACGTTTTCAATGGTGTCTGAAGGCTCCACCTCCAGGGTGATGGTCTTG 620256 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | |||||| || || |||||||| Sbjct 620257 CCAGTAAGAGTTTTGACGAAGATCTGCAT 620285 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || || || ||||||||||| | | | ||| |||| || Sbjct 620713 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGACAAAGTGCGACCGTCCTCA 620772 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 | |||||| ||||| || |||| |||||||||||| | ||| | ||||||||||| Sbjct 620773 AGCTGCTTTCCGGCGAAGATCAATCGCTGTTGATCTGGGGGGATTCCCTCCTTGTC 620828 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || || ||||| || | | | ||| |||| || | |||||| ||||| || Sbjct 620502 CTCCTTCTGGATGTTATAATCGGACAAAGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAA 620561 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| ||||| | ||||| ||||||||||| || || ||||| Sbjct 620562 GATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATTTTGGCCTTTACGTT 620621 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||||||||||| || || || || || || | |||||| || Sbjct 620622 TTCAATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTGAC 620681 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 620682 GAAGATCTGCAT 620693 >seq2 Length=2985096 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| ||| || || || ||||| || || | | | || Sbjct 123956 AGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGT 123897 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| ||||| || ||||| ||||| || || | ||||| ||||||| Sbjct 123896 CCATCCTCCAACTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCC 123837 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||||| || Sbjct 123836 TTGTCCTGGATCTTGGCCTTAACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTG 123777 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||||| || ||||| ||||| Sbjct 123776 ATGGTCTTGCCAGTCAGGGTTTTCACGAAAATTTGCAT 123739 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || |||| |||||||| | || ||| || || |||||||| || | Sbjct 124195 CGCCACCACGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGG 124136 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | | | | || |||| ||||||||||| ||||| || |||| ||||| || || | || Sbjct 124135 ACAAAGTGCGTCCGTCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGG 124076 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| |||||||||||| ||||| || || | | | || || | ||| | Sbjct 124075 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAA 124016 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || || || || || |||| || || || || |||||||| Sbjct 124015 CCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 123967 >seq1 Length=22559587 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || || ||| || || || ||||| || || || |||| Sbjct 1136954 AGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGG 1137013 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || ||||| ||||| ||||| | ||| | |||||| Sbjct 1137014 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCC 1137073 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||||||||||| || Sbjct 1137074 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTG 1137133 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || || || | ||||| || || || ||||| ||| Sbjct 1137134 ATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATGGTG 1137175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380897301563640