Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4563 260 3e-64 seq1 136 7e-27 >seq4563 Length=14502029 Score = 260 bits (288), Expect = 3e-64 Identities = 561/827 (68%), Gaps = 19/827 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | |||||||||||||| ||||| || |||| |||||| |||| Sbjct 3739884 CTGGTACTCGCCCACCTTCTTCTCAAAGAAGTTCGTCTTTCCGTCCAGCGAGATCATCTC 3739825 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| |||||||| || || || | || || || || || |||||| Sbjct 3739824 CATGAAGTTAAAGGGGTTCTTGGTATTGTAGATTT-TGCCAACGCTCAACTCCACCAGCA 3739766 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | | ||||| ||| | || ||||| | ||||| || | ||||||||| |||||| Sbjct 3739765 GTCGGTCCGCCACGAATTCAATGTACTGCGACATAAGATCGCAGTTCATGCCGATGAGGT 3739706 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 |||||||| || | || | ||||||| ||| || ||| || || | | |||| Sbjct 3739705 TTACGGGCAAGGCATCGGTTAAGAACTCCTGCTCAATGGCCACCGCATCGCGGATGATCT 3739646 Query 48078 GCTTAACGCGGGACTCTGAG---GGTTTGTTGCGC-AGGTGCTTGGCATAGAGCATGCA- 48132 | | ||| ||| | | || | | ||| | | ||||| | | | || ||| Sbjct 3739645 CGATGATGCG---CTC-GCGCCTGGGTCGCTGCACCAAGTGCTGGA---ACATCA-GCAC 3739594 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 ||||||||| | |||||||| ||||| ||| ||| ||| ||||||||||| || || Sbjct 3739593 GGCAAAGTCGCAATGCAAGCCCTCGTCGCGGGAGATAAGCTCGTTGGAGAAGGTCAGTCC 3739534 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | || | || || ||||||||||| | || || ||| ||||||||| Sbjct 3739533 CGGCATCAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAGAT 3739474 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 |||||| || || ||||| || ||| | ||| |||||| || ||| ||||| Sbjct 3739473 GCCCTCGACGGCAGCGAAGGCAATGATGCGCTCCCCGAAATTGGCCGATTTGGAGGAGAT 3739414 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 ||||||||| |||||||| ||||| ||| | ||||| ||||| ||||| ||| Sbjct 3739413 CCAGGAAAGGGCCCAGTCCGCCTTGCGCTTCACAGCCGGCATTGTCTCGATGGCGTTGAA 3739354 Query 48373 GAGCTTCTTGCACTCACCTGCG--TCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATC 48430 || | | | || | |||| ||| | || || || |||| |||||| Sbjct 3739353 CAGGTAGTCCCGCTGA--TGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATT 3739296 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || |||||||| ||||| || ||||| ||||| || |||||| || ||||| | | Sbjct 3739295 TCCGAGTGCACGTTCTCCATGGCGATTTGGAAGCCATAGAAGCACCGAGCCTCCGTGATC 3739236 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 ||||| || ||| | ||||| ||| ||||| || || || ||||| || || ||| Sbjct 3739235 TGCACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTCACGATGCCATCGGATGCGGCA 3739176 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCC 48610 |||||||| || || || | ||| || || |||| || | || | |||| | Sbjct 3739175 AAGAAGGCCAGCACGTGCGAGATGAAGTGACGTTCGTCGTCCTTCAGGCGGTGCCAGTCG 3739116 Query 48611 TGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | ||| ||| ||| ||||| || ||||| |||||||| || || Sbjct 3739115 GTCAGGTCCTTGGACAGATCCACCTCCTCCACGGTCCAGAAAGAGGC 3739069 >seq1 Length=22559587 Score = 136 bits (150), Expect = 7e-27 Identities = 742/1158 (64%), Gaps = 44/1158 (4%) Strand=Plus/Plus Query 212904 TGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTG 212963 ||| |||| || | ||||| || || || || || | ||| |||| || | ||| Sbjct 20041927 TGATGGTTAACCACTTGGAATTCTCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTG 20041986 Query 212964 TAGGGCTCGA-TGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGG 213022 || ||||||| || | |||||||| |||| ||| || ||||| || |||||||| || Sbjct 20041987 TAAGGCTCGAATGAT-TCGTTGTTACCCATAATTTGAGCAGTAGAAGCAGTGGGCATAGG 20042045 Query 213023 AGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGA-AGCT-CTGCC 213080 ||| |||| || ||||| || ||||||| |||| | | || || | ||||| Sbjct 20042046 AGCAACCAACAGGGAGTTCCGGACACCGTGCTTCTTGATG-GACTCCTTCAGTTTCTGCC 20042104 Query 213081 CAGTCCCATCTGCCAGACAGGTCCTCGTC-CTTCACGTTCCACATGTCAAACTGCAAGAT 213139 ||||||| || | || | | | ||| || ||||||||| |||||| || Sbjct 20042105 -AGTCCCAA-----AG---GTTCGTTGGCTCTTT--GTCCCACATGTCGTACTGCAGAAT 20042153 Query 213140 GCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTC 213199 ||||||||||||||||| |||| || | || || || | || |||||| || Sbjct 20042154 TCCTTTGCTCACGGGGCTTCCCTCATAGGTTTCATATGGACCTTCGATCTGGGCCAGTTC 20042213 Query 213200 GCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTT---GAG--C 213254 || || | || || |||||||||| ||||| || |||| | || ||| | Sbjct 20042214 ACAACTGGCTTCCAAAGCGCCGTAGTAGATAGTTTCGAAAATCTGCTGATTCAAGAGGCC 20042273 Query 213255 TTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCC 213314 ||| | || | | |||| | | |||| | || | ||||| | ||| Sbjct 20042274 GGCTTCATCACTTT---CAT--AGGGGAACCGCATGAGAATCAAGGCGTCAGCGAATCCC 20042328 Query 213315 TGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGG 213374 ||||| |||||||| | ||| | || |||| || || || | ||| || |||| Sbjct 20042329 TGGACACCGATGCCCACGGGACGATGCCTCAAATTGGATTTCTTGGCCTCTGGCAGGGGG 20042388 Query 213375 TAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCC 213434 || ||||| ||||| |||||||| || || ||| || ||||| || | Sbjct 20042389 TAGAAGTTAATATCGATTATCTTGTTAAGATTCTTGGTAACCGTCTTGGTAACTTCCTTA 20042448 Query 213435 AGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTG 213494 || | || | || | | || | | | || |||||| ||||||||| Sbjct 20042449 AGTTTCTTGAAATCGTAT--GTCTTCTCGGGAGTG-ACAAACATGTTGAGGGCGATGGAT 20042505 Query 213495 GCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGG 213554 |||| ||||||||| || | ||| | | | | ||||| | ||| || ||||||| Sbjct 20042506 GCCAAGTTGCAAACTGCAATCTCATCCGGAGCGGAATACTCTACGATTTCTGTGCACAAA 20042565 Query 213555 TTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTG 213614 ||||| || ||||||||| | ||||| ||||| ||| |||| | |||||| Sbjct 20042566 TTGCTACACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCCTTA 20042625 Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGT 213672 | | |||||||||| || || || | ||| | | || || |||| ||| ||| Sbjct 20042626 AACAACATGTAGGGGTTTCCAGTTTCGACCTGTG-CTTCAATAA-TGGCAAACCACAGGG 20042683 Query 213673 ACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCT 213732 | ||||| || | || || || | || || || | || || | || Sbjct 20042684 ATTGAGCCTTAACAGTTCTGTTGGCACGACCCTC--TTGC-TCATATTTCTCATACAACT 20042740 Query 213733 CGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGG-ATGCGGGACACATGAGG 213791 | |||||| | |||||| || || || || || || ||| ||| ||||| || Sbjct 20042741 TTTCGAATTCATCGCCCCACACATCGTGAAGCCCAGGGCATTTATGTGGG-CACATTAGC 20042799 Query 213792 CTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTG 213851 ||| || || | | ||| | || ||| || || || || | |||||| ||| Sbjct 20042800 GACCAATCTCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCACAGGGCGTAA 20042859 Query 213852 AACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCA 213911 ||||| || | || || | || ||| || | |||||| || || || || ||| Sbjct 20042860 AACAGATCGCGGGCCCGATTTTCCTCCTTGCCGGTGTTTTTCTTAAGTTCCAGGAACTCA 20042919 Query 213912 AAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCG 213968 |||| |||| |||||| ||||||| ||| ||||||||||| || || | |||| || Sbjct 20042920 AAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCACCT 20042979 Query 213969 CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTG 214028 || || ||||| | ||||| ||||||||| | || | ||| |||| || ||| Sbjct 20042980 CCTTGATCCACATAACGCGCCACATTGTTGAAGACCCTCAACATGGGAACCAAGCCATTG 20043039 Query 214029 GACTGT-CCGTTGGTTCC 214045 || ||| || || ||||| Sbjct 20043040 GA-TGTGCCATTCGTTCC 20043056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931431728691200