Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4563 174 3e-38 >seq4563 Length=14502029 Score = 174 bits (192), Expect = 3e-38 Identities = 531/818 (65%), Gaps = 19/818 (2%) Strand=Plus/Plus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571 |||||||| || ||| | |||||| |||||||| || || |||| || || | Sbjct 3739077 CTGGACCGTGGAGGAGGTGGATCTGTCCAAGGACCTGACCGACTGGCACCGCCTGAAGGA 3739136 Query 25572 AGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGT 25631 ||||| | || || || | ||||| |||| |||||||| || || ||||| || || Sbjct 3739137 CGACGAACGTCACTTCATCTCGCACGTGCTGGCCTTCTTTGCCGCATCCGATGGCATCGT 3739196 Query 25632 GAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTT 25691 ||||||||| ||| ||| | |||| ||| |||||| | |||||| ||| || Sbjct 3739197 GAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGCTCGGTGCTT 3739256 Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751 ||| || ||||| || ||||| || || |||||||| || |||| || | ||||| Sbjct 3739257 CTATGGCTTCCAAATCGCCATGGAGAACGTGCACTCGGAAATGTA---CAGTGTGCTGAT 3739313 Query 25752 -GACGTACATTACAGACG----TCGC-CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCA 25805 ||| || ||||| || ||| || | || ||||| ||||||||| | Sbjct 3739314 CGAC--AC-TTACATCCGGGATCCGCATCAGCGGGACTACCTGTTCAACGCCATCGAG-A 3739369 Query 25806 CATACCCAGC-ATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC- 25863 || || || | ||| | |||||| |||||| | |||||| | ||| | | Sbjct 3739370 CAATGCCGGCTGTGAAGCGCAAGGCGGACTGGGCCCTTTCCTGGATC-TCCTCCAAATCG 3739428 Query 25864 GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGT 25923 || | || || ||||| | | ||||| ||||| || ||||||||||| |||||||| Sbjct 3739429 GCCAATTTCGGGGAGCGCATCATTGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGC 3739488 Query 25924 TCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCC 25983 ||||| |||| |||||||| ||| || || ||||| || ||| ||| ||| Sbjct 3739489 AGCTTTGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACTGACCTTCTCC 3739548 Query 25984 AACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 |||||||| ||| | | |||||||| | || | || |||||| ||| | | | | Sbjct 3739549 AACGAGCTTATCTCCCGCGACGAGGGCTTGCATTGCGACTTTGCCGTGCTGATGTTCCAG 3739608 Query 26044 GGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTG 26103 |||||| | || ||| | ||| | || | |||||| || || ||| Sbjct 3739609 ---CACTTGGTGCAGCGACCCAGGCGCGAGCGCATCATCGAGATCATCCGCGATGCGGTG 3739665 Query 26104 GAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAAC 26163 | || ||| ||||||| | ||||||||| | Sbjct 3739666 GCCATTGAGCAGGAGTTCTTAACCGATGCCTTGCCCGTAAACCTCATCGGCATGAACTGC 3739725 Query 26164 AGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTC 26223 || ||| || |||||||| | ||||| |||| |||||| || || | | Sbjct 3739726 GATCTTATGTCGCAGTACATTGAATTCGTGGCGGACCGACTGCTGGTGGAGTTGAGCGTT 3739785 Query 26224 GCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGG 26283 | || | |||||| ||| ||||| || |||| ||||| | || ||| |||| || Sbjct 3739786 GGCAAAATCTACAATACCAAGAACCCCTTTAACTTCATGGAGATGATCTCGCTGGACGGA 3739845 Query 26284 AAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||| ||||||||||| |||| ||| ||||| || || Sbjct 3739846 AAGACGAACTTCTTTGAGAAGAAGGTGGGCGAGTACCA 3739883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928744020339200