Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30]
8,680 sequences; 232,923,092 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq4563 174 3e-38
>seq4563
Length=14502029
Score = 174 bits (192), Expect = 3e-38
Identities = 531/818 (65%), Gaps = 19/818 (2%)
Strand=Plus/Plus
Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571
|||||||| || ||| | |||||| |||||||| || || |||| || || |
Sbjct 3739077 CTGGACCGTGGAGGAGGTGGATCTGTCCAAGGACCTGACCGACTGGCACCGCCTGAAGGA 3739136
Query 25572 AGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGT 25631
||||| | || || || | ||||| |||| |||||||| || || ||||| || ||
Sbjct 3739137 CGACGAACGTCACTTCATCTCGCACGTGCTGGCCTTCTTTGCCGCATCCGATGGCATCGT 3739196
Query 25632 GAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTT 25691
||||||||| ||| ||| | |||| ||| |||||| | |||||| ||| ||
Sbjct 3739197 GAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGCTCGGTGCTT 3739256
Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751
||| || ||||| || ||||| || || |||||||| || |||| || | |||||
Sbjct 3739257 CTATGGCTTCCAAATCGCCATGGAGAACGTGCACTCGGAAATGTA---CAGTGTGCTGAT 3739313
Query 25752 -GACGTACATTACAGACG----TCGC-CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCA 25805
||| || ||||| || ||| || | || ||||| ||||||||| |
Sbjct 3739314 CGAC--AC-TTACATCCGGGATCCGCATCAGCGGGACTACCTGTTCAACGCCATCGAG-A 3739369
Query 25806 CATACCCAGC-ATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC- 25863
|| || || | ||| | |||||| |||||| | |||||| | ||| | |
Sbjct 3739370 CAATGCCGGCTGTGAAGCGCAAGGCGGACTGGGCCCTTTCCTGGATC-TCCTCCAAATCG 3739428
Query 25864 GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGT 25923
|| | || || ||||| | | ||||| ||||| || ||||||||||| ||||||||
Sbjct 3739429 GCCAATTTCGGGGAGCGCATCATTGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGC 3739488
Query 25924 TCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCC 25983
||||| |||| |||||||| ||| || || ||||| || ||| ||| |||
Sbjct 3739489 AGCTTTGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACTGACCTTCTCC 3739548
Query 25984 AACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043
|||||||| ||| | | |||||||| | || | || |||||| ||| | | | |
Sbjct 3739549 AACGAGCTTATCTCCCGCGACGAGGGCTTGCATTGCGACTTTGCCGTGCTGATGTTCCAG 3739608
Query 26044 GGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTG 26103
|||||| | || ||| | ||| | || | |||||| || || |||
Sbjct 3739609 ---CACTTGGTGCAGCGACCCAGGCGCGAGCGCATCATCGAGATCATCCGCGATGCGGTG 3739665
Query 26104 GAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAAC 26163
| || ||| ||||||| | ||||||||| |
Sbjct 3739666 GCCATTGAGCAGGAGTTCTTAACCGATGCCTTGCCCGTAAACCTCATCGGCATGAACTGC 3739725
Query 26164 AGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTC 26223
|| ||| || |||||||| | ||||| |||| |||||| || || | |
Sbjct 3739726 GATCTTATGTCGCAGTACATTGAATTCGTGGCGGACCGACTGCTGGTGGAGTTGAGCGTT 3739785
Query 26224 GCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGG 26283
| || | |||||| ||| ||||| || |||| ||||| | || ||| |||| ||
Sbjct 3739786 GGCAAAATCTACAATACCAAGAACCCCTTTAACTTCATGGAGATGATCTCGCTGGACGGA 3739845
Query 26284 AAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
||||| ||||||||||| |||| ||| ||||| || ||
Sbjct 3739846 AAGACGAACTTCTTTGAGAAGAAGGTGGGCGAGTACCA 3739883
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928744020339200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |