Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq137 125 5e-23 seq1 114 8e-20 seq4812 95.1 8e-14 seq5605 91.5 1e-12 >seq137 Length=289679 Score = 125 bits (138), Expect = 5e-23 Identities = 362/548 (66%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| || || | || | || |||| || || | Sbjct 77274 TTGGTATTGATTTGGGCACGACCTACTCGTGCGTGGGAGTGTTCCAGCATGGCAAGGTCG 77215 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || || ||||| ||||| |||||| | || || ||||| |||||| | || || || | Sbjct 77214 AGATCATCGCCAACGACCAGGGTAATCGTACCACTCCATCCTATGTTGCCTTCACCGATA 77155 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | ||| || || ||||| || || | || | || || || | || | Sbjct 77154 CGGAGCGTCTGATCGGCGATGCCGCCAAGAACCAGGTGGCCATGAACCCGACCCAGACGA 77095 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || ||||| || | |||||||| || || || || || | |||| || ||||| | Sbjct 77094 TCTTCGATGCCAAGCGTTTGATTGGCCGCAAGTTCGAGGACTCTGCTGTGCAGTCTGACA 77035 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630 || || ||||| || ||||| | | | | ||| || || | || || | | | Sbjct 77034 TGAAGCACTGGCCCTTCGAGGTGGTCAGCGCCGATGGCAAGCCCAAGATCGAGGTGACCT 76975 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || || || ||||| | |||| Sbjct 76974 ACAAGGACGAG-AAGAAGACCTTCTTC-CCCGAGGAGATCTCCTCCATGGTGCTCACCAA 76917 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 ||||| | || | |||| | || | ||| ||||| || || | || || || || Sbjct 76916 GATGAAGGAGACAGCCGAG-GCCTA-CCTGGGCAAGACTGTGACCAACGCGGTCATCACC 76859 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || || || || || ||||| ||||| || || || ||||| |||| || || Sbjct 76858 GTGCCGGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGAACCATCGCC 76799 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||| | || || | ||||| || || || || || || || || | || || ||||| Sbjct 76798 GGTTTGAACGTGCTGCGTATCATCAACGAGCCCACCGCCGCGGCCATCGCCTACGGTCTG 76739 Query 474869 GATAAGAA 474876 || ||||| Sbjct 76738 GACAAGAA 76731 Score = 125 bits (138), Expect = 5e-23 Identities = 362/548 (66%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| || || | || | || |||| || || | Sbjct 85317 TTGGTATTGATTTGGGCACGACCTACTCGTGCGTGGGAGTGTTCCAGCATGGCAAGGTCG 85258 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || || ||||| ||||| |||||| | || || ||||| |||||| | || || || | Sbjct 85257 AGATCATCGCCAACGACCAGGGTAATCGTACCACTCCATCCTATGTTGCCTTCACCGATA 85198 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | ||| || || ||||| || || | || | || || || | || | Sbjct 85197 CGGAGCGTCTGATCGGCGATGCCGCCAAGAACCAGGTGGCCATGAACCCGACCCAGACGA 85138 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || ||||| || | |||||||| || || || || || | |||| || ||||| | Sbjct 85137 TCTTCGATGCCAAGCGTTTGATTGGCCGCAAGTTCGAGGACTCTGCTGTGCAGTCTGACA 85078 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630 || || ||||| || ||||| | | | | ||| || || | || || | | | Sbjct 85077 TGAAGCACTGGCCCTTCGAGGTGGTCAGCGCCGATGGCAAGCCCAAGATCGAGGTGACCT 85018 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || || || ||||| | |||| Sbjct 85017 ACAAGGACGAG-AAGAAGACCTTCTTC-CCCGAGGAGATCTCCTCCATGGTGCTCACCAA 84960 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 ||||| | || | |||| | || | ||| ||||| || || | || || || || Sbjct 84959 GATGAAGGAGACAGCCGAG-GCCTA-CCTGGGCAAGACTGTGACCAACGCGGTCATCACC 84902 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || || || || || ||||| ||||| || || || ||||| |||| || || Sbjct 84901 GTGCCGGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGAACCATCGCC 84842 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||| | || || | ||||| || || || || || || || || | || || ||||| Sbjct 84841 GGTTTGAACGTGCTGCGTATCATCAACGAGCCCACCGCCGCGGCCATCGCCTACGGTCTG 84782 Query 474869 GATAAGAA 474876 || ||||| Sbjct 84781 GACAAGAA 84774 >seq1 Length=22559587 Score = 114 bits (126), Expect = 8e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| |||| || || | | |||||| || ||||| ||||| || || ||||| || Sbjct 20155499 TTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGC 20155440 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| |||||||||||||| ||||| |||||||| ||||||| ||| |||||||| Sbjct 20155439 TGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCC 20155380 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || || || || || ||||| ||||| ||||| || || Sbjct 20155379 GAAGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTG 20155324 >seq4812 Length=908733 Score = 95.1 bits (104), Expect = 8e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || |||||||| || || || || ||||| || || || || |||||||| |||||| Sbjct 619903 TCCTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTG 619962 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||| ||||| ||||| |||||| ||||||| | ||| || ||||| Sbjct 619963 TCTTGGATCTTGGCCTTGACGTTTTCAATGGTATCAGAAGGCTCGACTTCCAGAGTAATG 620022 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| | |||||| ||||| ||||| Sbjct 620023 GTCTTTCCGGTCAAAGTCTTCACGAAGATTTG 620054 >seq5605 Length=440438 Score = 91.5 bits (100), Expect = 1e-12 Identities = 187/278 (67%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 475895 CCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAAT 475954 ||||| || || || |||| || | || ||| | ||||| || || ||||| | || Sbjct 237016 CCACTCTCGTTGGGCATTGAGACCGCCGGCGGGGTGATGACCAAGCTGATTGAGCGCAAC 237075 Query 475955 ACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACT 476014 | | ||||||||||| | || || || |||| || | || || || | | Sbjct 237076 AGCCGCATCCCATGCAAGCAGTCCAAGACCTTCACCACCTACGCGGACAACCAGCCGGCG 237135 Query 476015 GTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGA 476074 || |||||||| | || || || ||| | | || || || || ||| ||| || Sbjct 237136 GTGACCATCCAGGTGTTCGAGGGCGAACGTGCTCTAACCAAGGACAACAACGTACTGGGC 237195 Query 476075 ACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACT 476134 || || || || || ||||| || |||||||| ||||| || | || || || || Sbjct 237196 ACCTTCAACCTGACGGGCATTCCGCCCGCTCCCAGGGGAGTGCCCAAGATCGATGTCACC 237255 Query 476135 TTTGATATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 |||||| | ||||| ||||||||||| ||||| || || Sbjct 237256 TTTGATCTCGATGCTAATGGTATTCTGAATGTGACCGC 237293 Score = 87.8 bits (96), Expect = 1e-11 Identities = 186/278 (67%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 475895 CCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAAT 475954 ||||| || || || |||| || | || ||| | ||||| || || ||||| | || Sbjct 235907 CCACTCTCGTTGGGCATTGAGACCGCCGGCGGGGTGATGACCAAGCTGATTGAGCGCAAC 235966 Query 475955 ACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACT 476014 | | ||||||||||| | || || || |||| || | || || || | | Sbjct 235967 AGCCGCATCCCATGCAAGCAGTCCAAGACCTTCACCACCTACGCGGACAACCAGCCGGCG 236026 Query 476015 GTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGA 476074 || ||||| || | || || || ||| | | || || || || ||| ||| || Sbjct 236027 GTGACCATTCAGGTGTTCGAGGGCGAACGTGCTCTAACCAAGGACAACAACGTACTGGGC 236086 Query 476075 ACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACT 476134 || || || || || ||||| || |||||||| ||||| || | || || || || Sbjct 236087 ACCTTCAACCTGACGGGCATTCCGCCCGCTCCCAGGGGAGTGCCCAAGATCGATGTCACC 236146 Query 476135 TTTGATATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 |||||| | ||||| ||||||||||| ||||| || || Sbjct 236147 TTTGATCTCGATGCTAATGGTATTCTGAATGTGACCGC 236184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267806872684640