Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3275 114 1e-20 >seq3275 Length=287013 Score = 114 bits (126), Expect = 1e-20 Identities = 201/283 (71%), Gaps = 10/283 (4%) Strand=Plus/Minus Query 139263 CCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCT 139322 || || | |||||| || ||||| | | |||||||| || || || || || || Sbjct 260800 CCCTCGGGACCATGGTAAATGGCATACATGGCCGACATATTGGCCAGAAGAGCCTGAGCC 260741 Query 139323 GTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCT 139382 |||||||||||||| || || |||||||||| || ||||||||||| ||||| || || Sbjct 260740 GTGCAGATGTTACTCGTGGCCTTGTCTCTTCGGATGTGCTGCTCTCTGGTTTGCAGGGCC 260681 Query 139383 AATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGA--CCTACAATTCTGCCAGGTA 139440 |||| ||| ||| ||| || || ||||| ||| ||| || | || ||||| || | Sbjct 260680 AATCGGTAGGCATCATTTCCGTCCATGTCC-CTG-GTGACCCCGATCATCCTGCCGGGCA 260623 Query 139441 TCTTTCTC-TTATACT-TGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCC 139498 || | | | ||| ||| || | || |||||| ||||||| || || || || || Sbjct 260622 TCAAGCGCACCAAACTCTGTTTGCAG--GCGAAGAATCCAGCATGGGGTCCACCATAGCC 260565 Query 139499 CATAGGAA-TACCAAACCTTTGCATACTACCTACAGCAATATC 139540 || ||||| | ||| || | | | | | || ||||||||||| Sbjct 260564 CAGAGGAACTCCCAGACGCTGGGA-AGTTCCCACAGCAATATC 260523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578935578673600