Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30]
8,680 sequences; 232,923,092 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq5978 125 2e-23
seq6094 95.1 4e-14
seq5716 91.5 4e-13
>seq5978
Length=4749261
Score = 125 bits (138), Expect = 2e-23
Identities = 192/266 (72%), Gaps = 12/266 (5%)
Strand=Plus/Minus
Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634
|||||| ||| || | ||||||||| || ||||| ||| || ||| || ||||| |||
Sbjct 3459669 TCCATAGCCTTTATGAGACGACGCTGGATGTAACCGGTTTCAGCTGTCTTCACAGCGGTA 3459610
Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCG--GTCGT-AGC 302691
||||| ||||| ||||||||||||| || |||| ||||| | |||| | || ||
Sbjct 3459609 TCAATGAGACCCTCACGACCACCCATGGCGTGGA--AATAGAAC-TCCGAAGGAGTAAGG 3459553
Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTG 302748
|| | | | | ||| |||| ||||| ||||| | ||| || || ||||||| |||
Sbjct 3459552 CCGGCCAGATACGAGTTCTCCACGAAGCCACGGGACTCAGGACCGTAATCGTC---TTTG 3459496
Query 302749 GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTC 302808
| ||||| || || || | || | ||||| ||||||||||| || || ||||||
Sbjct 3459495 ATGAAGTGAGGAAGAGTACGCTTGCGGAAACCGTAGGGGATACGCTTACCCTCCACGTTC 3459436
Query 302809 TGCTGTCCCAGGCACGAAATCATCTG 302834
||||| |||| || | ||| | |||
Sbjct 3459435 TGCTGACCCACACAAGCAATAACCTG 3459410
>seq6094
Length=94375
Score = 95.1 bits (104), Expect = 4e-14
Identities = 176/256 (69%), Gaps = 2/256 (1%)
Strand=Plus/Minus
Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462
|||||| || ||||| ||||| | || |||| ||| | ||| || | ||| | ||
Sbjct 43996 GGCGATCAGGCCACAGAAGTTACAGATGTGCACGCGGTAGGGATCGGAGACCTCAAACAG 43937
Query 251463 CCGACCCTTGGTGAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCAC 251521
|| | || | | | | ||| || ||||| || ||| ||||||||||||||| ||||
Sbjct 43936 ACG-CTCTCGCAGGAACTGAGCGGCGCCGTGGGAGATCTGACAATCACGCTCCATCTCAC 43878
Query 251522 CGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCA 251581
||||||| | |||||||| || || | |||||| |||||||||| || | |
Sbjct 43877 CGAAACGCAAGCCACCATCACGGGCACGACCCTCCATAGGCTGACGAACCAGGATCTGGA 43818
Query 251582 TAGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGA 251641
||||| || || || ||| || | |||||||||||||||||||| |||
Sbjct 43817 CGGGACCACGGGCACGCGAGTGAATCTTGTCGTCCACCATATGCTTGAGACGCTGATAGT 43758
Query 251642 ATGCGGGACCGATGAA 251657
| | ||| || | |||
Sbjct 43757 AAGTGGGTCCCAAGAA 43742
>seq5716
Length=85880
Score = 91.5 bits (100), Expect = 4e-13
Identities = 145/203 (71%), Gaps = 4/203 (2%)
Strand=Plus/Plus
Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904
|| ||||||||| ||||| || |||||||| |||||||| || ||| || || ||
Sbjct 10860 ATTGTCATACGAGATGGAATGGCGTGGGGATTAATGATGATATCTGGTGCCAAGCCCTC- 10918
Query 251905 GCAG-TGAAGGGCATATCCTTTTCCTCAATAATGTTTCCAATA-GTTCCCTTTTGTCCGT 251962
|||| |||| | |||||||| || | ||| || | | | | ||||||||||||||||
Sbjct 10919 GCAGGTGAAAGCCATATCCTCTTGA-CGATACTGGATACCACACGTTCCCTTTTGTCCGT 10977
Query 251963 GACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTAC 252022
|||| || ||||||||| || || || || || ||| | |||| ||| |
Sbjct 10978 GACGGGAGGCGAACTTATCGCCGATCTGGGGGATACGCACGGAACGCACTCGAATCTTGC 11037
Query 252023 AGAAGTTGTAACCATCACCGTTG 252045
|||| ||||| || || | ||||
Sbjct 11038 AGAACTTGTAGCCCTCGCTGTTG 11060
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471653915485160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |