Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5978 125 2e-23 seq6094 95.1 4e-14 seq5716 91.5 4e-13 >seq5978 Length=4749261 Score = 125 bits (138), Expect = 2e-23 Identities = 192/266 (72%), Gaps = 12/266 (5%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | ||||||||| || ||||| ||| || ||| || ||||| ||| Sbjct 3459669 TCCATAGCCTTTATGAGACGACGCTGGATGTAACCGGTTTCAGCTGTCTTCACAGCGGTA 3459610 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCG--GTCGT-AGC 302691 ||||| ||||| ||||||||||||| || |||| ||||| | |||| | || || Sbjct 3459609 TCAATGAGACCCTCACGACCACCCATGGCGTGGA--AATAGAAC-TCCGAAGGAGTAAGG 3459553 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTG 302748 || | | | | ||| |||| ||||| ||||| | ||| || || ||||||| ||| Sbjct 3459552 CCGGCCAGATACGAGTTCTCCACGAAGCCACGGGACTCAGGACCGTAATCGTC---TTTG 3459496 Query 302749 GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTC 302808 | ||||| || || || | || | ||||| ||||||||||| || || |||||| Sbjct 3459495 ATGAAGTGAGGAAGAGTACGCTTGCGGAAACCGTAGGGGATACGCTTACCCTCCACGTTC 3459436 Query 302809 TGCTGTCCCAGGCACGAAATCATCTG 302834 ||||| |||| || | ||| | ||| Sbjct 3459435 TGCTGACCCACACAAGCAATAACCTG 3459410 >seq6094 Length=94375 Score = 95.1 bits (104), Expect = 4e-14 Identities = 176/256 (69%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 |||||| || ||||| ||||| | || |||| ||| | ||| || | ||| | || Sbjct 43996 GGCGATCAGGCCACAGAAGTTACAGATGTGCACGCGGTAGGGATCGGAGACCTCAAACAG 43937 Query 251463 CCGACCCTTGGTGAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCAC 251521 || | || | | | | ||| || ||||| || ||| ||||||||||||||| |||| Sbjct 43936 ACG-CTCTCGCAGGAACTGAGCGGCGCCGTGGGAGATCTGACAATCACGCTCCATCTCAC 43878 Query 251522 CGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCA 251581 ||||||| | |||||||| || || | |||||| |||||||||| || | | Sbjct 43877 CGAAACGCAAGCCACCATCACGGGCACGACCCTCCATAGGCTGACGAACCAGGATCTGGA 43818 Query 251582 TAGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGA 251641 ||||| || || || ||| || | |||||||||||||||||||| ||| Sbjct 43817 CGGGACCACGGGCACGCGAGTGAATCTTGTCGTCCACCATATGCTTGAGACGCTGATAGT 43758 Query 251642 ATGCGGGACCGATGAA 251657 | | ||| || | ||| Sbjct 43757 AAGTGGGTCCCAAGAA 43742 >seq5716 Length=85880 Score = 91.5 bits (100), Expect = 4e-13 Identities = 145/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || ||||||||| ||||| || |||||||| |||||||| || ||| || || || Sbjct 10860 ATTGTCATACGAGATGGAATGGCGTGGGGATTAATGATGATATCTGGTGCCAAGCCCTC- 10918 Query 251905 GCAG-TGAAGGGCATATCCTTTTCCTCAATAATGTTTCCAATA-GTTCCCTTTTGTCCGT 251962 |||| |||| | |||||||| || | ||| || | | | | |||||||||||||||| Sbjct 10919 GCAGGTGAAAGCCATATCCTCTTGA-CGATACTGGATACCACACGTTCCCTTTTGTCCGT 10977 Query 251963 GACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTAC 252022 |||| || ||||||||| || || || || || ||| | |||| ||| | Sbjct 10978 GACGGGAGGCGAACTTATCGCCGATCTGGGGGATACGCACGGAACGCACTCGAATCTTGC 11037 Query 252023 AGAAGTTGTAACCATCACCGTTG 252045 |||| ||||| || || | |||| Sbjct 11038 AGAACTTGTAGCCCTCGCTGTTG 11060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471653915485160