Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq7033 185 7e-42 seq3325 95.1 1e-14 >seq7033 Length=4374125 Score = 185 bits (204), Expect = 7e-42 Identities = 170/213 (80%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 34437 ATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGG 34496 ||||| | ||||||| ||||||| |||||| || |||||||| ||||| || ||||||| Sbjct 62709 ATCGAACAGCGTTTGGGCGCCCAACTCGCAGCCAAAGTACTTGGTCGGATAGGTGGCCGG 62650 Query 34497 ACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCC 34556 ||||||| ||| |||| | ||||| ||||||||| | || ||||| ||||| ||||| Sbjct 62649 GCGTCCAATGGCCCTGGCCACTTCGGCCATGTTGACCAGAACGGTCTTTATGCCATTGCC 62590 Query 34557 CTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCC 34614 ||| || || |||||||| ||||| || ||||| |||||||| ||||| ||||| | Sbjct 62589 CTTGCCCTCTACCTTGGCCTGCAGA--CGTGGCATCTTGTAGCGATAGAAGATGTCCGTC 62532 Query 34615 ACATTGCGGTTAACGTTCACAGTCCCCATCGTG 34647 ||| ||||||||||||| || || ||||| || Sbjct 62531 ACACTGCGGTTAACGTTTACGGTGGCCATCTTG 62499 >seq3325 Length=21082 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || |||||||| ||||| |||||||||||||| || | ||| |||||| Sbjct 19614 AATGCAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACTCTTGAAGTTGAGCCTTC 19673 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| ||| | || || ||||| ||||| || || | ||| ||||| Sbjct 19674 TGATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 19733 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | || |||| || || || ||||||||||||| | || || | |||||||| Sbjct 19734 GCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATTACAA 19793 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| || || || || || | ||| ||||| | | || || || |||| Sbjct 19794 CATCCAGAAGGAGTCCACCCTTCACTTGGTGCTTCGTCTACGCGGTGGAA 19843 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || |||||||| ||||| |||||||||||||| || | ||| |||||| Sbjct 19842 AATGCAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACTCTTGAAGTTGAGCCTTC 19901 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| ||| | || || ||||| ||||| || || | ||| ||||| Sbjct 19902 TGATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 19961 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | || |||| || || || ||||||||||||| | || || | |||||||| Sbjct 19962 GCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATTACAA 20021 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| || || || || || | ||| ||||| | | || || || |||| Sbjct 20022 CATCCAGAAGGAGTCCACCCTTCACTTGGTGCTTCGTCTACGCGGTGGAA 20071 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || |||||||||||| | || ||||| ||||| ||| | || ||| ||| Sbjct 20070 AATGCAGATCTTTGTCAAAACTCTTACTGGCAAGACCATCACCCTGGAGGTGGAACCTTC 20129 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | || || ||||| ||||| || ||| | ||| ||||| Sbjct 20130 GGACACCATTGAAAACGTCAAGGCTAAGATCCAAGACAAGGAGGGCATCCCCCCAGATCA 20189 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | || || | || || || ||||| ||||||| | || || | |||||||| Sbjct 20190 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACCCTGTCCGATTACAA 20249 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||| || || || || |||||| |||| | | ||||| || || Sbjct 20250 CATTCAGAAGGAGTCGACCTTGCACTTGGTTCTCCGTCTGCGTGGTGG 20297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412797926519240