Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30]
8,680 sequences; 232,923,092 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq5016 84.2 2e-11
seq3325 84.2 2e-11
seq1 82.4 6e-11
>seq5016
Length=829163
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/139 (76%), Gaps = 4/139 (3%)
Strand=Plus/Plus
Query 105081 GGACTGCACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCC 105140
|| || ||||| || |||||||||||||| || || | || ||||||||||| ||| ||
Sbjct 681810 GGCCTTCACGGATTCCACGTTCACGAGTTTGGGGACAACACCAACGGCTGCATGTCGTCC 681869
Query 105141 GGCGAGCACTTCAA-CCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAA-AGGC 105198
|| ||||||||| ||||| | || | | ||||| ||||| | || || |||| | |
Sbjct 681870 GGACCGCACTTCAACCCCTATG-GCAAGGAGCACGGAGCTCCCGCCGACG-AGAATCGTC 681927
Query 105199 ACGTCGGCGACCTGGGCAA 105217
|| | || || ||||||||
Sbjct 681928 ACCTGGGAGATCTGGGCAA 681946
>seq3325
Length=21082
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614
|||||| || |||||||| ||||| || ||||||||||| || | ||| ||| ||
Sbjct 19614 AATGCAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACTCTTGAAGTTGAGCCTTC 19673
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| ||| | || || ||||| || || || || | ||| |||||
Sbjct 19674 TGATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 19733
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||| | || |||| || || || ||||||||||| | || || | || |||||
Sbjct 19734 GCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATTACAA 19793
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||| || |||||||| || | ||| |||||
Sbjct 19794 CATCCAGAAGGAGTCCACCCTTCACTTGGTG 19824
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614
|||||| || |||||||| ||||| || ||||||||||| || | ||| ||| ||
Sbjct 19842 AATGCAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACTCTTGAAGTTGAGCCTTC 19901
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| ||| | || || ||||| || || || || | ||| |||||
Sbjct 19902 TGATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 19961
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||| | || |||| || || || ||||||||||| | || || | || |||||
Sbjct 19962 GCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATTACAA 20021
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||| || |||||||| || | ||| |||||
Sbjct 20022 CATCCAGAAGGAGTCCACCCTTCACTTGGTG 20052
>seq1
Length=22559587
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| || || ||||| | || ||||| ||||| ||| | || |||| ||
Sbjct 1137171 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 1137112
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | || || ||||| || || || || | ||| ||||||
Sbjct 1137111 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 1137052
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || || | || || || ||||||||||||| | ||| || | |||||||||
Sbjct 1137051 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGAACCCTGTCCGACTACAAC 1136992
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| || |||||||| || | ||| |||||
Sbjct 1136991 ATCCAGAAGGAGTCGACCCTCCACCTGGTG 1136962
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398834603820520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |