Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq5016 84.2 2e-11 seq3325 84.2 2e-11 seq1 82.4 6e-11 >seq5016 Length=829163 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 105081 GGACTGCACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCC 105140 || || ||||| || |||||||||||||| || || | || ||||||||||| ||| || Sbjct 681810 GGCCTTCACGGATTCCACGTTCACGAGTTTGGGGACAACACCAACGGCTGCATGTCGTCC 681869 Query 105141 GGCGAGCACTTCAA-CCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAA-AGGC 105198 || ||||||||| ||||| | || | | ||||| ||||| | || || |||| | | Sbjct 681870 GGACCGCACTTCAACCCCTATG-GCAAGGAGCACGGAGCTCCCGCCGACG-AGAATCGTC 681927 Query 105199 ACGTCGGCGACCTGGGCAA 105217 || | || || |||||||| Sbjct 681928 ACCTGGGAGATCTGGGCAA 681946 >seq3325 Length=21082 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || |||||||| ||||| || ||||||||||| || | ||| ||| || Sbjct 19614 AATGCAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACTCTTGAAGTTGAGCCTTC 19673 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | || || ||||| || || || || | ||| ||||| Sbjct 19674 TGATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 19733 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || |||| || || || ||||||||||| | || || | || ||||| Sbjct 19734 GCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATTACAA 19793 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || | ||| ||||| Sbjct 19794 CATCCAGAAGGAGTCCACCCTTCACTTGGTG 19824 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || |||||||| ||||| || ||||||||||| || | ||| ||| || Sbjct 19842 AATGCAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACTCTTGAAGTTGAGCCTTC 19901 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | || || ||||| || || || || | ||| ||||| Sbjct 19902 TGATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 19961 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || |||| || || || ||||||||||| | || || | || ||||| Sbjct 19962 GCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATTACAA 20021 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || | ||| ||||| Sbjct 20022 CATCCAGAAGGAGTCCACCCTTCACTTGGTG 20052 >seq1 Length=22559587 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || ||||| | || ||||| ||||| ||| | || |||| || Sbjct 1137171 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 1137112 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || || || || | ||| |||||| Sbjct 1137111 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 1137052 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||||||||||| | ||| || | ||||||||| Sbjct 1137051 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGAACCCTGTCCGACTACAAC 1136992 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 1136991 ATCCAGAAGGAGTCGACCCTCCACCTGGTG 1136962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398834603820520