Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30]
8,680 sequences; 232,923,092 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq6677 132 4e-25
seq8559 127 2e-23
seq137 100 2e-15
>seq6677
Length=374367
Score = 132 bits (146), Expect = 4e-25
Identities = 269/397 (68%), Gaps = 7/397 (2%)
Strand=Plus/Minus
Query 282083 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCT 282142
|| || | |||||| ||||| || || | ||| || || | || | || | |||
Sbjct 1496 TTTGCCCTTTCACAAGCTGTTCTCAGACGTCGCAAAGCCCTGGCATTTCCCTTGATATCC 1437
Query 282143 GTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAAT 282200
| || | || ||||| || || ||| || | ||| | || || || ||||||||||
Sbjct 1436 GACTTGTGCTTCCTCTTAAACTCCTCAGCAAA--ATGGTTGACCAGCCGGTTATCAAAAT 1379
Query 282201 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT---CCATCTT 282257
| ||||| ||||| | ||| | ||| | ||| | |||| | ||| || || || |
Sbjct 1378 CCTCACCACCCAAGTGAGTGTCTCCAGCCGTGGACTTTACCTCGAAGAGGGAGCCCTCAT 1319
Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317
||| | || || | ||||| ||| || ||||||| || ||||| || |||||
Sbjct 1318 CAATGGTCAGAATGGAGACATCGAAGGTGCCGCCACCCAGGTCGAAAATCAGAACATTGC 1259
Query 282318 TTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 282377
|| | |||| ||||| | ||||| || || ||||| ||||| ||||| ||||
Sbjct 1258 GCTCCCCCTTGAGGTTCTTATCCAATCCATAGGCCAAGGCAGCCGCAGTGGGTTCGTTAA 1199
Query 282378 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 282437
| || |||| ||||| || || ||||| || ||||| || || || |||| ||
Sbjct 1198 TGATCCTCAGCACATTCAGCCCCGCAATGGAACCCGCATCCTTGGTTGCCTGTCGCTGGC 1139
Query 282438 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474
|||||||||||| || || || ||||| ||||| ||
Sbjct 1138 TATCGTTAAAATAGGCTGGCACCGTAATCACGGCGTC 1102
>seq8559
Length=59032
Score = 127 bits (140), Expect = 2e-23
Identities = 268/397 (68%), Gaps = 7/397 (2%)
Strand=Plus/Plus
Query 282083 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCT 282142
|| || | |||||| |||||||| | | ||| || || | || | || | |||
Sbjct 19721 TTTGCCCTTTCACAAGCTGTCCTCAAACGTCGCAAAGCCCTGGCATTTCCCTTGATATCC 19780
Query 282143 GTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAAT 282200
| || | || ||||| || || ||| || | ||| | || || || ||||||||||
Sbjct 19781 GACTTGTGCTTCCTCTTAAACTCCTCAGCAAA--ATGGTTGACCAGCCGGTTATCAAAAT 19838
Query 282201 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG---TCCATCTT 282257
| ||||| ||||| | ||| | ||| | ||| | |||| | ||| || || || |
Sbjct 19839 CCTCACCACCCAAGTGAGTGTCTCCAGCCGTGGACTTTACCTCGAAGAGGGAGCCCTCAT 19898
Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317
||| | || || | ||||| ||| || ||||||| || ||||| || |||||
Sbjct 19899 CAATGGTCAGAATGGAGACATCGAAGGTGCCGCCACCCAGGTCGAAAATCAGAACATTGC 19958
Query 282318 TTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 282377
|| | |||| ||||| | || || || || ||||| ||||| |||||||| |
Sbjct 19959 GCTCCCCCTTGAGGTTCTTATCTAATCCGTAGGCCAAGGCAGCCGCAGTGGGTTCATTGA 20018
Query 282378 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 282437
| || |||| ||||| || |||||||| || ||||| || || || || | ||
Sbjct 20019 TGATCCTCAGCACATTTAGCCCAGCAATGGAGCCCGCATCCTTGGTCGCCTGACGCTGGC 20078
Query 282438 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474
|||||| ||||| || || || ||||| ||||||||
Sbjct 20079 TATCGTTGAAATAGGCTGGCACCGTAATTACGGCATC 20115
>seq137
Length=289679
Score = 100 bits (110), Expect = 2e-15
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 282671 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTG 282730
||||| || || || ||||| || || || | ||| || || | || | || | |||
Sbjct 77070 CCAATCAAACGCTTGGCATCGAAGATCGTCTGGGTCGGGTTCATGGCCACCTGGTTCTTG 77129
Query 282731 GCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGA 282790
|| ||||| || |||||| | || || || || || | |||||| |||||||| || |||
Sbjct 77130 GCGGCATCGCCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGATGGAGTGGTACGA 77189
Query 282791 TTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTA 282850
||||| || || || || || || || || || |||| || | || || || ||
Sbjct 77190 TTACCCTGGTCGTTGGCGATGATCTCGACCTTGCCATGCTGGAACACTCCCACGCACGAG 77249
Query 282851 AAAGTTGTTCCTAAATCAATACCAATAGCA 282880
| || || || ||||||||||||| ||||
Sbjct 77250 TAGGTCGTGCCCAAATCAATACCAACAGCA 77279
Score = 100 bits (110), Expect = 2e-15
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 282671 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTG 282730
||||| || || || ||||| || || || | ||| || || | || | || | |||
Sbjct 85113 CCAATCAAACGCTTGGCATCGAAGATCGTCTGGGTCGGGTTCATGGCCACCTGGTTCTTG 85172
Query 282731 GCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGA 282790
|| ||||| || |||||| | || || || || || | |||||| |||||||| || |||
Sbjct 85173 GCGGCATCGCCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGATGGAGTGGTACGA 85232
Query 282791 TTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTA 282850
||||| || || || || || || || || || |||| || | || || || ||
Sbjct 85233 TTACCCTGGTCGTTGGCGATGATCTCGACCTTGCCATGCTGGAACACTCCCACGCACGAG 85292
Query 282851 AAAGTTGTTCCTAAATCAATACCAATAGCA 282880
| || || || ||||||||||||| ||||
Sbjct 85293 TAGGTCGTGCCCAAATCAATACCAACAGCA 85322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740204248681680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |