Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1 163 6e-35 seq3325 158 2e-33 seq4812 107 4e-18 >seq1 Length=22559587 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || ||||| || ||||||| ||| || || ||||| || ||||| ||||| Sbjct 20155548 ACCACCACGCAGGCGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGA 20155489 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || || || ||||| ||||| || | || ||||||||||| Sbjct 20155488 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 20155429 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||| || || |||||||| ||||| |||||||| || ||||| |||||| || Sbjct 20155428 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGAC 20155369 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| || | ||||| || || |||||||| Sbjct 20155368 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 20155321 >seq3325 Length=21082 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| ||||| || |||| ||| ||||| ||||| || || ||||| | Sbjct 20755 TACCACCACGCAGACGGAGAACCAAATGCAAAGTCGATTCCTTCTGGATGTTGTAATCGG 20696 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| || |||||||| || || ||||| | || || |||||||| | Sbjct 20695 ACAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGG 20636 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || ||||||||||| || || || || | Sbjct 20635 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCTGATGGCTCAA 20576 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||||| || || |||||||| || | ||||| ||||| ||||||||| Sbjct 20575 CTTCCAAGGTGATGGTCTTGCCAGTAAGTGTCTTGACAAAGATCTGCATT 20526 Score = 152 bits (168), Expect = 1e-31 Identities = 179/241 (74%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || ||||| || || || || ||||| || || || || || Sbjct 19613 CCACCGCGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 19554 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || |||||||| || || ||||| || | || |||||||| || Sbjct 19553 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGG 19494 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| || || || || || ||||| ||||||||||| || || || Sbjct 19493 ATGCCCTCCTTATCCTGGATTTTGGCCTTCACATTCTCAATCGTATCGGAGGGCTCCACC 19434 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTTTC 82823 |||||||| || ||||| || ||||| ||||| ||||| ||||||||| || ||| ||| Sbjct 19433 TCCAAAGTAATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCATT-TTGGATTATTC 19375 Query 82824 T 82824 | Sbjct 19374 T 19374 >seq4812 Length=908733 Score = 107 bits (118), Expect = 4e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || ||||| || || || || ||||| || || |||||||| Sbjct 620695 CCACCGCGCAGACGGAGTACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGAC 620754 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | |||||| || || || ||||| || ||||| | || ||||||||||| || Sbjct 620755 AAAGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAAGATCAATCGCTGTTGATCTGGGGGG 620814 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 ||||| ||||| || || ||||| || || ||||| ||| Sbjct 620815 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCA 620853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981718008542520