Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2 116 9e-21 seq3325 105 2e-17 seq4812 102 2e-16 seq1 98.7 2e-15 >seq2 Length=2985096 Score = 116 bits (128), Expect = 9e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||||||||| || || ||| || || |||| Sbjct 123754 AAAACCCTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCTTCCGATACCATCGAGAAT 123813 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || ||| || | || |||||| Sbjct 123814 GTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGTCTGATCTTC 123873 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||||||||| |||||| | |||||| |||| |||||| ||||||| ||||| Sbjct 123874 GCCGGAAAGCAGTTGGAGGATGGACGCACTTTGTCCGACTACAACATCCAGAAGGAGTCC 123933 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 123934 ACCCTCCAC 123942 Score = 100 bits (110), Expect = 7e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||||||||| || || ||| || || |||| Sbjct 123982 AAGACCCTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCTTCCGATACCATCGAGAAC 124041 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || ||| || | | |||||| Sbjct 124042 GTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGTTTGATCTTC 124101 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||||||||| || ||| | |||||| |||| ||||| ||||||| |||||| Sbjct 124102 GCCGGAAAGCAGTTGGAGGACGGACGCACTTTGTCCGACTACAATATCCAGAAGGAGTCT 124161 Query 206365 ACT 206367 ||| Sbjct 124162 ACT 124164 >seq3325 Length=21082 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || ||||| |||||| | ||||| || |||||| Sbjct 19618 CAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACTCTTGAAGTTGAGCCTTCTGAT 19677 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || ||||| || || || Sbjct 19678 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAG 19737 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||||||||||||| |||| ||||| | |||||| | ||||||||| || Sbjct 19738 CGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATTACAACATC 19797 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| || |||||| Sbjct 19798 CAGAAGGAGTCCACCCTTCAC 19818 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || ||||| |||||| | ||||| || |||||| Sbjct 19846 CAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACTCTTGAAGTTGAGCCTTCTGAT 19905 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || ||||| || || || Sbjct 19906 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAG 19965 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||||||||||||| |||| ||||| | |||||| | ||||||||| || Sbjct 19966 CGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATTACAACATC 20025 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| || |||||| Sbjct 20026 CAGAAGGAGTCCACCCTTCAC 20046 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || || || || ||||| |||| |||||| ||| ||| Sbjct 20074 CAGATCTTTGTCAAAACTCTTACTGGCAAGACCATCACCCTGGAGGTGGAACCTTCGGAC 20133 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| ||||| || || || || || || || Sbjct 20134 ACCATTGAAAACGTCAAGGCTAAGATCCAAGACAAGGAGGGCATCCCCCCAGATCAGCAG 20193 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||||||||||||| | || ||||| | || || ||||||||||| | Sbjct 20194 CGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACCCTGTCCGATTACAACATT 20253 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| || | ||| | ||| Sbjct 20254 CAGAAGGAGTCGACCTTGCACTTGGTT 20280 Score = 93.3 bits (102), Expect = 1e-13 Identities = 148/209 (71%), Gaps = 9/209 (4%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAG--- 206225 ||||| ||| | ||| || | || ||||| || |||||| | || ||||| ||| Sbjct 20837 CAGAT-TTTCGTAAAGACTTTGACCGGAAAGACAATCACTCTTGAGGTGGAGCCAAGAGC 20895 Query 206226 -TTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGG 206284 ||| ||||| | ||| |||||| || || || || || || ||||| || | Sbjct 20896 CTTCGGACACTATTGAAAACGTAAAGGCGAAAATCCAGGACAAGGAGGGAATCCCCCCAG 20955 Query 206285 ACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATT 206344 | || | || || ||||||||||||||| |||| ||||| | |||||| | |||| Sbjct 20956 ATCAGCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATT 21015 Query 206345 ACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||||| ||||| || |||||| Sbjct 21016 ACAACATCCAGAAGGAGTCCACCCTTCAC 21044 >seq4812 Length=908733 Score = 102 bits (112), Expect = 2e-16 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| || || || || || ||||| |||| ||||| ||| ||| Sbjct 620282 CAGATCTTCGTCAAAACTCTTACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTCAGAC 620223 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| || ||| ||||| || || || ||| || || || Sbjct 620222 ACCATTGAAAACGTCAAAGCCAA-GATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCA 620164 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || |||||||||||||||||| | || ||||| | |||||| ||||||||||| | Sbjct 620163 GCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCCGATTACAACAT 620104 Query 206352 CCAGAAAGAGTCTAC 206366 ||||| ||||| || Sbjct 620103 TCAGAAGGAGTCGAC 620089 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| || || || || || ||||| |||| ||||| ||| ||| Sbjct 620690 CAGATCTTCGTCAAAACTCTTACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTCGGAC 620631 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| |||||| || || ||||| || || || ||| || || || Sbjct 620630 ACCATTGAAAACGTAAAGGCCAAAATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAG 620571 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||||||||||||| | || || || | |||||| ||||||| ||| || Sbjct 620570 CGTCTTATCTTCGCCGGAAAGCAGCTTGAGGACGGTCGCACTTTGTCCGATTATAACATC 620511 Query 206353 CAGAAAGAGTC 206363 ||||| ||||| Sbjct 620510 CAGAAGGAGTC 620500 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| |||| ||||| ||| ||||| | ||| Sbjct 620498 AAAACTCTTACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTCGGACACCATTGAAAAC 620439 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || || || ||| || || || | ||||||||| Sbjct 620438 GTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAGCGTCTTATCTTC 620379 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || |||| || ||| | || || |||| |||||| ||||||| ||||| Sbjct 620378 GCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTCG 620319 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 620318 ACCCTCCAC 620310 Score = 87.8 bits (96), Expect = 4e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || || ||| ||||||| || |||||| || | ||| || ||| Sbjct 620033 ACCGGAAAGACCATTACTCTGGAAGTCGAGCCTTCTGATACCATTGAAAACGTCAAGGCC 619974 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || |||||| || ||| || | || ||||||||||| ||| Sbjct 619973 AAGATCCAAGACAAGGAGGGAATTCCCCCAGACCAGCAGCGTCTCATCTTCGCCGGCAAG 619914 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCT 206369 || |||| || ||| | || || | || |||||| ||||||| ||||| || || Sbjct 619913 CAACTGGAGGACGGACGCACCCTGTCTGACTACAACATCCAGAAGGAGTCGACCCT 619858 >seq1 Length=22559587 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| ||||| ||||| ||| ||||| |||| Sbjct 1137156 AAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCGGACACCATCGAGAAT 1137097 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || || || | || |||||| Sbjct 1137096 GTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAGCGTCTGATCTTC 1137037 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || |||| |||||| ||||||| ||||| Sbjct 1137036 GCCGGCAAGCAGCTGGAGGACGGCCGAACCCTGTCCGACTACAACATCCAGAAGGAGTCG 1136977 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 1136976 ACCCTCCACCTGGT 1136963 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || |||||| | || || ||| ||| || || ||||| Sbjct 20155336 AAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCTTCGGATACTATCGAAAAT 20155395 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || |||||| || |||||||||||| || || || | || ||||| Sbjct 20155396 GTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAGCGTCTGATCTT 20155454 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| |||||||||| | || | | || || ||| | ||||| ||||| Sbjct 20155455 CGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAACATTCAGAAGGAGTC 20155514 Query 206364 TACTCTTCAC 206373 ||| | ||| Sbjct 20155515 CACTTTGCAC 20155524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181689366754280