Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1 235 5e-57 seq5016 131 2e-25 seq4812 104 2e-17 seq3325 98.7 9e-16 seq4563 86.0 6e-12 seq2 86.0 6e-12 >seq1 Length=22559587 Score = 235 bits (260), Expect = 5e-57 Identities = 955/1483 (64%), Gaps = 40/1483 (3%) Strand=Plus/Plus Query 146551 ACAGTGAATTGTTGTGTGTGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTG 146610 |||||||| || | || || || || |||||||||| |||||||| || ||||| Sbjct 20041591 ACAGTGAACTGAATAGCGTTTGCAGCTGGCTTTGTGCGCAGGTAATACATTCCAGTTTTT 20041650 Query 146611 AGGCCACATCGCCACGAGTGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCC 146670 || ||| | ||| || | | ||| || ||||| | | |||| | ||||| ||| Sbjct 20041651 AGACCAGCTTTCCAGGAATAAAAGTGTATGGAAGTAAGTTTTCCGTAGTTTGGCTCTGCC 20041710 Query 146671 ACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCA 146730 || || || ||||| || || |||||||| || || || || || ||||||| | Sbjct 20041711 ACATGAATGTTGAACGACTGACTCTGATCTATAAACGCACCTCGATCTGCGGCCATCTTA 20041770 Query 146731 ATCATGCGTTTTGTCTTCATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGA 146790 || || ||| |||||||| | ||||||||||| | ||| | | || Sbjct 20041771 ATAGTGGACTTTACTGAGATTTCCCACACAGTTTTGTACAGATCGCGAACCTTCTGGGGG 20041830 Query 146791 ATACCTTCAATGTTTTGAATAGAGCCCTTGTGCGCAAAAATAGTGTTTCGT-ATTTCGGG 146849 || | ||||| ||||| || |||||| || | || || || ||| | || ||| Sbjct 20041831 ATGGCCTCAATATTTTGGATTGAGCCCCTGCTGGAAATGATT-TGGTTCTTCATATCGT- 20041888 Query 146850 CGTGTAA-AGGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACT 146908 ||| | | || || | | ||||| | |||| || || |||||||| || | Sbjct 20041889 CGTCCCACAAGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGTTAACCACTTGGAATT 20041948 Query 146909 CGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTAT 146968 | || | ||| || || ||| ||| | ||| | ||| ||||||| || || || || | Sbjct 20041949 CTCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTGTAAGGCTCGAATGATTCGTTGT 20042008 Query 146969 TGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCA 147028 | || | ||||| || || | || || ||||| || ||||||| || || || | Sbjct 20042009 TACCCATAATTTGAGCAGTAGAAGCAGTGGGCATAGGAGCAACCAACAGGGAGTTCCGGA 20042068 Query 147029 GACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCA 147088 ||||| | |||| ||||||| | ||||||||||| | || ||| Sbjct 20042069 CACCGTGCTTCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGTTCGTTGGCTCTT 20042128 Query 147089 CGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGT 147148 || ||||||||||||||| || | |||| || |||| || || | | || | Sbjct 20042129 TGTCCCACATGTCGTACTGCAGAATTCCTTTGCTCACGGGGCTTCCCTCATAGGTTTCAT 20042188 Query 147149 AGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTT 147208 | || ||| ||| |||| |||||| || || || | || || ||||| || |||| Sbjct 20042189 ATGGACCTTCGATCTGGGCCAGTTCACAACTGGCTTCCAAAGCGCCGTAGTAGATAGTTT 20042248 Query 147209 CGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCA 147268 || || || | || | || | ||||| || || || || || | |||| || | Sbjct 20042249 CGAAAATCTGCTGATTCAAGAGGCCGGCTTCATCACTTTCATAGGGGAACCGCATGAGAA 20042308 Query 147269 CAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGC 147328 ||||| || || || ||||||| ||||| ||| | || |||||| | ||| Sbjct 20042309 TCAAGGCGTCAGCGAATCCCTGGACACCGATGCCCACGGGACGATGCCTCAAATTGGATT 20042368 Query 147329 GCTTCGCGCTC-GCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACT 147387 ||| || ||| | | ||| ||| ||| ||| || |||||||| || || Sbjct 20042369 TCTTGGC-CTCTGGCAGGGGGTAGAAGTTAATATCGATTATCTTGTTAAGATTCTTGGTA 20042427 Query 147388 ACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGTACG 147447 || || || | | || ||||||| |||||| || ||| | ||| | || Sbjct 20042428 ACCGTCTTGGTAACTTCCTTAAGTTTCTTGAAATCGTATGTC---TTCTCGGGAGTGACA 20042484 Query 147448 CATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTAC 147507 | ||| | |||||| || |||| ||||| || || |||| || | || ||| Sbjct 20042485 AACATGTTGAGGGCGATGGATGCCAAGTTGCAAACTGCAATCTCATCCGGAGCGGAATAC 20042544 Query 147508 TGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTT 147567 | |||||||| | ||||| ||||| || || ||| || | ||| ||||| ||||| Sbjct 20042545 TCTACGATTTCTGTGCACAAATTGCTACACTTGATGGTGCCGACATTCTGCTGGTTGCTC 20042604 Query 147568 TTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCA 147627 |||| ||||| || || || || | |||||| || || || ||||| || | |||| Sbjct 20042605 TTCCTGTTGCAGGCATCCTTAAACAACATGTAGGGGTTTCCAGTTTCGACCTGTGCTTCA 20042664 Query 147628 ACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCG--CTGCCGATAGCGGCCCTCGT 147682 | || ||||| |||| || || | | | | ||| | | || ||||| | Sbjct 20042665 ATAATGGCAAACC---ACAGGGATTGAGC-CTTAACAGTTCTGTTGGCA-CGACCCTCTT 20042719 Query 147683 TTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGAC 147742 || || ||| |||||| || || || ||||| | |||| ||| || || | Sbjct 20042720 GCTCATATTTCTCATACAACTTTTCGAATTCATCGCCCCACACATCGTGAAGCCCAGGGC 20042779 Query 147743 ACTGATGCGGACACATCAGCGACCACATGT-CGTCCGCGTTAACGCGTCGCATAAACAGA 147801 | | ||| || ||||| |||||||| || | | | || | ||||| |||||| ||| Sbjct 20042780 ATTTATGTGGGCACATTAGCGACCA-ATCTCCATTGGCCTCGACGCGCTTCATAAAGAGA 20042838 Query 147802 TCCGGCACCCACAGCGCGTACATAAGATCGCG----CGCTTTGCAATCCTCGGCGCCCAT 147857 || || | |||||| ||||| | |||||||| || ||| ||||| ||| | Sbjct 20042839 TCGGGTATCCACAGGGCGTAAAACAGATCGCGGGCCCGATTT----TCCTCCTTGCCGGT 20042894 Query 147858 GTTGCGTTTC--AAATT--AAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGA 147913 ||| |||| || || | | || | | ||| || | ||||||||| || | ||| | Sbjct 20042895 GTT---TTTCTTAAGTTCCAGGAACTC-AAAGACATCCGAGTGCCAGGGCTCCAGGTAAA 20042950 Query 147914 CGGCCAGCGCACCTTTACGCTT---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAA 147970 ||| | ||||| |||||| || || || || |||| ||| ||| ||||| | Sbjct 20042951 TGGCAAAGGCACCGGGACGCTTGCCACCTCCTTGATCCACATAACGCGCCACATTGTTGA 20043010 Query 147971 ACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGT 148013 | || | || |||||| ||| ||| | | ||||| || || Sbjct 20043011 AGACCCTCAACATGGGAACCAAGCCATTGGATGTGCCATTCGT 20043053 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| ||||| || | | ||||| || |||||||| ||||| | ||| Sbjct 20155542 ACGCAGGCGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGT 20155483 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | |||| |||||||| ||||||||||| || || Sbjct 20155482 GCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 20155423 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || ||| || ||| | | ||| | |||||| | || || || || | Sbjct 20155422 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAG 20155363 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || || || | ||| |||||||| Sbjct 20155362 AGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 20155321 >seq5016 Length=829163 Score = 131 bits (144), Expect = 2e-25 Identities = 233/338 (69%), Gaps = 3/338 (1%) Strand=Plus/Minus Query 51541 CAATACCGATGATGCCGCAGCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAGCG 51600 |||| || |||| ||||||||| | || | || | ||| ||||||| |||||||||| Sbjct 682143 CAATGCCAATGACGCCGCAGCCAATGCGGGCACCAGCGTTTCCCGTGGACTTGCTCAGCT 682084 Query 51601 GATGGTCGGTGAGGCCGAGATCGTCGCGCTTTGCGTGAACCACCAGACTGCGGCCAACGA 51660 ||| | |||||||||| ||| | ||||| ||||| | |||| || | || Sbjct 682083 CGTGGCCACCCTGGCCGAGATCATCGGCATCGGCGTGGACCACAACGGTGCGCCCTATGA 682024 Query 51661 CGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCGT 51720 ||| | ||||||| | ||| ||| |||| | ||| || | ||| || | Sbjct 682023 TGCTGTCGGCGCCGAACAACGTGATCTTCGAGTCGGTAATGTTGACCTTCGTG-GGACAG 681965 Query 51721 TGGACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAG 51780 | | | || ||||| | ||||||| || || | ||| || || | || |||| Sbjct 681964 TCGCCGCTC--GCCTCAATGTTGCCCAGATCTCCCAGGTGACGATTCTCGTCGGCGGGAG 681907 Query 51781 CGCCGTGGTCGCTGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGG 51840 | ||||| || |||| |||||||||||| || | |||| ||||||||||| || Sbjct 681906 CTCCGTGCTCCTTGCCATAGGGGTTGAAGTGCGGTCCGGACGACATGCAGCCGTTGGTGT 681847 Query 51841 TGTCGCCGAATTCGTGCACGTGGAATCCGTGCAGGCCC 51878 |||| || || ||||| |||||||||||||| |||||| Sbjct 681846 TGTCCCCAAACTCGTGAACGTGGAATCCGTGAAGGCCC 681809 >seq4812 Length=908733 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||||||| | | | ||||| || ||||||||||| ||| || || Sbjct 620064 ACGCAGACGGAGAACCAAATGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGACAAAGT 620123 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || |||| |||| |||||||| |||||||| || || || Sbjct 620124 GCGACCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATACC 620183 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || ||| | | ||| | || || | |||||||| || | Sbjct 620184 CTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCTGAAGGCTCCACCTCCAG 620243 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||| |||||||| | ||| |||||||| Sbjct 620244 GGTGATGGTCTTGCCAGTAAGAGTTTTGACGAAGATCTGCAT 620285 >seq3325 Length=21082 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || |||||||||||| || ||| || || || Sbjct 19595 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 19536 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || ||||| |||| |||| |||||||| |||||||| || ||||| || ||||| Sbjct 19535 AGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATGCCCTCCTTATCCTGG 19476 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| |||| | || | ||||||| |||||||| || | || | || || Sbjct 19475 ATTTTGGCCTTCACATTCTCAATCGTATCGGAGGGCTCCACCTCCAAAGTAATGGTCTTT 19416 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| || || | || |||||||| Sbjct 19415 CCAGTCAAGGTCTTCACAAAGATCTGCAT 19387 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || |||||||||||| || ||| || || || Sbjct 20507 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 20448 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || ||||| |||| |||| |||||||| |||||||| || ||||| || || || Sbjct 20447 AGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGG 20388 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | ||| | ||| || | ||||| ||||| | || | || || Sbjct 20387 ATTTTAGCCTTTACGTTTTCAATAGTGTCCGAAGGCTCTACTTCAAGAGTGATGGTCTTT 20328 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| ||| || | |||||||||||| Sbjct 20327 CCGGTCAAAGTCTTGACGAAAATCTGCAT 20299 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | |||||| || | | | ||||| || ||||||||||| ||| || ||| Sbjct 20292 ACGCAGACGGAGAACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGACAGGGT 20233 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || |||| |||| |||||||| |||||||| || ||||| Sbjct 20232 GCGACCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCC 20173 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | ||| | || || | || ||||| || | Sbjct 20172 CTCCTTGTCTTGGATCTTAGCCTTGACGTTTTCAATGGTGTCCGAAGGTTCCACCTCCAG 20113 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||| |||||||| | || |||||||| Sbjct 20112 GGTGATGGTCTTGCCAGTAAGAGTTTTGACAAAGATCTGCAT 20071 >seq4563 Length=14502029 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/128 (77%), Gaps = 9/128 (7%) Strand=Plus/Plus Query 46461 TGGAAGGTGGAGGAGGTGGATCTGTCTAGGGACTATGAC-GACTTTGA--GTCTAAATTA 46517 |||| |||||||||||||||||||| | |||| |||| |||| | | || || Sbjct 3739078 TGGACCGTGGAGGAGGTGGATCTGTCCAAGGACC-TGACCGACTGGCACCGCCTGAAG-- 3739134 Query 46518 AACGATGACGAACGTTACTTTATCAAGCACGTGTTGGCGTTCTTTGCCGCCGCCGATAGC 46577 || ||||||||| |||| ||| ||||||| |||| ||||||||||| ||||| || Sbjct 3739135 ---GACGACGAACGTCACTTCATCTCGCACGTGCTGGCCTTCTTTGCCGCATCCGATGGC 3739191 Query 46578 ATCGTGAA 46585 |||||||| Sbjct 3739192 ATCGTGAA 3739199 >seq2 Length=2985096 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || |||||||||||| || || || ||| || Sbjct 123947 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGTCCATCCTCC 123888 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||| || |||| |||| |||||||| || ||||| || ||||| || || || Sbjct 123887 AACTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 123828 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | ||||||| ||||| || || | || | || || Sbjct 123827 ATCTTGGCCTTAACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTTG 123768 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 |||||||| ||||| | |||||| |||||| Sbjct 123767 CCAGTCAGGGTTTTCACGAAAATTTGCATG 123738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476559487684800