Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_025963.1 Length=139981 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 >seq1 Length=22559587 Score = 123 bits (136), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 5333 AGAAGCACTCGCAGATGAGCTGCGCCACGCGGTCGCCTCGCCGCACCACGAAGGTCTCTT 5392 ||| || ||||| |||| ||| || | ||||||||| ||| |||| |||| | | | Sbjct 20854183 AGATGCGTTCGCAAATGAACTGGGCAATGCGGTCGCCACGCTTCACCTCGAACTCCACGT 20854124 Query 5393 GGCCGAAG--TTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGACGCC 5450 |||| |||||||| || || || ||||| || ||| ||||| |||||| ||||| Sbjct 20854123 --CCGAGTGATTGAAGAGGACGACGCCAAGGTTGCCGCGGTAGTCCTCGTCCACCACGCC 20854066 Query 5451 CGCTCCCACATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCGCCACGCGACCGTA 5510 || |||||||| | |||||| ||||| || || || || | ||| ||||| || ||||| Sbjct 20854065 GGCACCCACATCGATGAAGTTCTTTACGGCCAGTCCAGATCGCGGGGCCACCCGTCCGTA 20854006 Query 5511 GCAGCCGTATGGCGGGTGGATCTGCAGATCGGTC 5544 | |||| | || || | ||||||||||||| Sbjct 20854005 GGAGCCCTCGGGAACCTGCACCTGCAGATCGGTC 20853972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447762612484800