Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4563 192 8e-43 seq7694 113 6e-19 >seq4563 Length=14502029 Score = 192 bits (212), Expect = 8e-43 Identities = 356/517 (69%), Gaps = 9/517 (2%) Strand=Plus/Plus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 |||| |||||||| || ||||||| |||||||| || || | ||| | | ||| Sbjct 3739061 AGGCTGAGGCCTCTTTCTGGACCGTGGAGGAGGTGGATCTGTCCAAGGACCTGACCGACT 3739120 Query 1455856 GGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCC 1455915 || |||| |||||||| || || |||||| |||||| || ||||| ||| ||| Sbjct 3739121 GGCACCGCCTGAAGGACGACGAACGTCACTTCATCTCGCACGTGCTGGCCTTCTTT-GCC 3739179 Query 1455916 GCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTG 1455975 || ||||||||||||| ||||||||||| | ||||| | | ||||| || | Sbjct 3739180 GCATCCGATGGCATCGTGAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATC 3739239 Query 1455976 CCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACC 1456035 | ||||| || | || || || ||||| |||||||| || ||| | ||||| |||| Sbjct 3739240 ACGGAGGCTCGGTGCTTCTATGGCTTCCAAATCGCCATGGAGAACGTGCACTCGGAAATG 3739299 Query 1456036 TACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGC 1456095 ||| | ||||||||||| ||| || ||| ||| || |||| |||| || | Sbjct 3739300 TACAGTGTGCTGATCGACACTTACATCCGGGATCCGCATCAGCGGGACTACCTGTTCAAC 3739359 Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGA--TCA 1456153 |||||||| || ||||| | |||| | ||||| |||||||| | |||| || Sbjct 3739360 GCCATCGAGACAATGCCGGCTGTGAAGCGCAAGGCGGACTGGGCCCTTTCCTGGATCTCC 3739419 Query 1456154 ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCAT 1456212 | | |||| | || | ||||| || | | ||| || | |||||||||||| Sbjct 3739420 TCCAAATCGGCC----AATTTCGGGGAGCGCATCATTGCCTTCGCTGCCGTCGAGGGCAT 3739475 Query 1456213 CTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||| ||| ||||| || | |||| || ||||| ||||||||||| || ||||| || Sbjct 3739476 CTTCTTCAGCGGCAGCTTTGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGG 3739535 Query 1456273 TCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 | | ||| |||||| ||||| |||||||| Sbjct 3739536 AC-TGACCTTCTCCAACGAGCTTATCTCCCGCGACGA 3739571 >seq7694 Length=285784 Score = 113 bits (124), Expect = 6e-19 Identities = 234/346 (68%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACG-TGTTGCA 332931 || ||||| |||||||| || ||| | || || |||| | || || | ||||||| Sbjct 60735 AATCGCAGCATGGCACATCGCGACTGGATGGGTTCAATGATC-TTCTCGCTGGTGTTGCA 60793 Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTG 332991 ||||| ||| || | ||| || | ||| | |||||||| || | ||| || || Sbjct 60794 GGCCAAGGCGAATCTCGTGGTGCTACTATAGATCTCCATGGTGCGGCGCAAGGCTTGCTG 60853 Query 332992 GGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGG 333051 ||| || || | || ||| |||||||||||||| | ||||| || | ||| | || Sbjct 60854 GGCACCCTCTGTCATGCTGTCCGCCTCGTCGAGGATCACAATCTTATGCCTTCCGCGGGG 60913 Query 333052 CAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCG 333111 ||| ||| ||| | ||| ||||| | |||||||| || || | || || Sbjct 60914 CAGCGTCACCTTTTGCTGGGCAAACATCTTGATCTTATTGCGCACCACATCGATACCTCG 60973 Query 333112 CTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCG 333171 ||| | || ||||| | ||||| |||||||| | | | |||| ||||| | Sbjct 60974 CTCATTGGAGGCGTTTAACTCGAGGACGGCCTCCTTATAGCTATCTCCCAGGAGGATCCT 61033 Query 333172 CGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 |||||| ||| |||| | |||||||||||| ||| || |||||| Sbjct 61034 CGCCAGACACTGGATGGTGGTGGTCTTGCCCACGCCAGGAGGACCC 61079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176973998046160